Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01193 | ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACTAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCCCGGCGGCTTTCATCGGCTTCGGATCGTTCGGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACGACTGCAGTTGCTGCATCGATCCCGTCATCAGATAGCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA | 699 | 47.07 | MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8780053 | 8782569 | - | Cp4.1LG08g11870.1 | Cpe08g01193 | 474159 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01193 | 232 | MobiDBLite | consensus disorder prediction | 170 | 198 | - | - | |
| Cpe08g01193 | 232 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cpe08g01193 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 232 | - | - | |
| Cpe08g01193 | 232 | CDD | RING_CH-C4HC3_MARCH | 108 | 160 | - | - | |
| Cpe08g01193 | 232 | SUPERFAMILY | RING/U-box | 105 | 163 | - | - | |
| Cpe08g01193 | 232 | PANTHER | OS01G0850200 PROTEIN | 8 | 232 | - | - | |
| Cpe08g01193 | 232 | SMART | ringv_2 | 107 | 160 | IPR011016 | GO:0008270 | |
| Cpe08g01193 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 100 | 166 | IPR011016 | GO:0008270 | |
| Cpe08g01193 | 232 | Pfam | RING-variant domain | 108 | 159 | IPR011016 | GO:0008270 | |
| Cpe08g01193 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 168 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00081 | Cpe08g01193 | CCT | |
| Cpe08g01193 | Cpe19g00305 | CCT | |
| Cpe08g01193 | Cpe19g00305 | ECH | |
| Cpe03g00081 | Cpe08g01193 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01193 | Cpe-Chr8:8780053 | Cpe19g01076 | Cpe-Chr19:7343744 | 6.67E-32 | dispersed | |
| Cpe01g02534 | Cpe-Chr1:20756211 | Cpe08g01193 | Cpe-Chr8:8780053 | 5.07E-75 | wgd | |
| Cpe13g01080 | Cpe-Chr13:8732164 | Cpe08g01193 | Cpe-Chr8:8780053 | 3.19E-53 | wgd | |
| Cpe19g00305 | Cpe-Chr19:2654666 | Cpe08g01193 | Cpe-Chr8:8780053 | 1.03E-64 | wgd | |
| Cpe20g00846 | Cpe-Chr20:7608385 | Cpe08g01193 | Cpe-Chr8:8780053 | 1.58E-53 | wgd | |
| Cpe03g00081 | Cpe-Chr3:432033 | Cpe08g01193 | Cpe-Chr8:8780053 | 2.39E-150 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01193 | - | - | csv:101218915 | 392.119 |