Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01215 ATGGAAGGGAGAGACGAAGATGTGAGAGTTGGAGCCAACAGGTTCGAGGAGAGGCAGCCGATTGGGACGGCAGCTCAGACCCAAATTGCGGCAAAGGACTACCGAGAGCCGGCGCCGGCGCCGCTGGTTGAAGCGGGGGAGTTAAGGTCATGGTCGTTTTACAGAGCTGGAATTGCAGAGTTTGTGGCCACTTTCCTGTTCCTTTATGTGACTATTTTGACAGTAATGGGAGTCGCCAAATCTCCCAATAAGGCAATCTTTTACATAATAATGCAATGCCTAGGCGCCATCTCGGGTGCCGCCGTCGTAAAAGCCTTCGAAAACGCCCAATTTGTAACCGTCGGCGGCGGAGCTAACACCATCAATGCAGGCTATTCCAAAACAGCCGGCCTCGGAGCTGAAATCATGGGCACATTTCTTCTTGTTTACACAGTCTTCTCAGCCACCGATGCAAAGCGAAACGCCCGAGATTCCCATGTTCCTATGTTGGCTCCATTGCCGATTGGGTTCGCGGTGTTCTTAGTGCATTTGGCCACCATTCCGATCACCGGAACTGGCATTAATCCGGCCAGAAGCCTCGGCGCCGCCCTCGTTTACAACCGCCACCAAGCCTGGCATGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGAGCAGCACTGGCGGCTCTCTACCATCAGACAGTGATCAGAGCAATACCATTCAAGTCCAGATGA 717 53.7 MEGRDEDVRVGANRFEERQPIGTAAQTQIAAKDYREPAPAPLVEAGELRSWSFYRAGIAEFVATFLFLYVTILTVMGVAKSPNKAIFYIIMQCLGAISGAAVVKAFENAQFVTVGGGANTINAGYSKTAGLGAEIMGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNRHQAWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8878269 8879744 - Cp4.1LG08g12150.1 Cpe08g01215 474181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01215 238 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 83 238 - -
Cpe08g01215 238 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 84 - -
Cpe08g01215 238 Gene3D Glycerol uptake facilitator protein. 83 236 IPR023271 -
Cpe08g01215 238 Gene3D Glycerol uptake facilitator protein. 40 82 IPR023271 -
Cpe08g01215 238 SUPERFAMILY Aquaporin-like 47 231 IPR023271 -
Cpe08g01215 238 Pfam Major intrinsic protein 82 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe08g01215 238 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe08g01215 238 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe08g01215 238 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe08g01215 238 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 83 238 IPR034294 -
Cpe08g01215 238 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 84 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00344 Cpe-Chr5:1929953 Cpe08g01215 Cpe-Chr8:8878269 2.12E-87 dispersed
Cpe08g01215 Cpe-Chr8:8878269 Cpe13g00151 Cpe-Chr13:1096359 3.27E-129 dispersed
Cpe01g01049 Cpe-Chr1:6196921 Cpe08g01215 Cpe-Chr8:8878269 4.48E-125 wgd
Cpe01g00140 Cpe-Chr1:810724 Cpe08g01215 Cpe-Chr8:8878269 2.30E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01215 K09872 - cpap:110807714 370.933