Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01222 ATGGATTTCGAACAAGAAACGCCGATCTTGCAAAACGGCGCCGTCAAGAGTTCGCTGATCGGTCGGACGGCTCACAACATGTCGTCGTCATCGCTGCGGAGAAAGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGTTGTCTTAGGCTGTTGCTTGTGAATCTTCAAGAGGTCATTTTGGGAACGAAGATTTGGTTTCTTTTTCCGGCGATTCCGTTGGCTGTGTTGGCCGACTCTCTTGGCTTCGGAAGAGCGTGGGTTTTCGTTCTGAGCTTATTGGGGCTTGCTCCACTTGCGGAACGCCTGAGCTTTCTGACGGAACAAATCTCATATTTCACCGGCCCCACAATTGGTGGCTTATTAAATGCGACATGTGGCAATGCGACGGAGCTAATTATAGCAATATTTGCACTTAGCAAGGACAAAATCGAGTTGGTGAAGTACTCTCTTTTGGGATCGGTTCTATCAAACCTTCTGGTCGTTCTTGGAACCTCGCTTTTCATTGGTGGCATCGTCAACCTTAAAAGACAACAAACCTATGACCAAAGACAAGCTGAGGTGAACTCACACATGTTGTTGTTGGCGCTTTTATGTCATTTGCTTCCAATGTTGTTCCCTTATGTCAGAGGGTCTACTGATGTGGTTGTAGCTGACGCACTGCGATTGTCTAGAGCAAGTAGTATAGTAATGTTGGTGGCTTACGTAGCTTACTTGATCTTTCAACTATGGACTCACCGTGGATTTTTTGAACCAGATAAGGAACTAGATGTATACAACGACGACGTTGTGCAAGAAGCACCAACGATTGGAATATGGAGCACAGTGGCTTGGTTGGTAGGCGTTACTGTTCTCATTGCTTTGTTGTCGGAGTACGTGGTGGCTACAATTGAGGACGCTTCGAAAAGTTGGGGGCTATCGGTTACGTTCCTTAGCATGATATTACTACCACTGGTTGGAAATGCAGCCGAGCACGCAGGAGCTCTCATATTTGCTTATAAGAACAAGTTGGATATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGATGAGGTTACTATCGTCCATTCCCAATTATCGAGAGTTCAACTGA 1110 45.68 MDFEQETPILQNGAVKSSLIGRTAHNMSSSSLRRKSDLTLVSKVRFGCLRLLLVNLQEVILGTKIWFLFPAIPLAVLADSLGFGRAWVFVLSLLGLAPLAERLSFLTEQISYFTGPTIGGLLNATCGNATELIIAIFALSKDKIELVKYSLLGSVLSNLLVVLGTSLFIGGIVNLKRQQTYDQRQAEVNSHMLLLALLCHLLPMLFPYVRGSTDVVVADALRLSRASSIVMLVAYVAYLIFQLWTHRGFFEPDKELDVYNDDVVQEAPTIGIWSTVAWLVGVTVLIALLSEYVVATIEDASKSWGLSVTFLSMILLPLVGNAAEHAGALIFAYKNKLDITLGVALGSATQIAMFVMRLLSSIPNYREFN 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8906933 8909411 - Cp4.1LG08g12160.1 Cpe08g01222 474188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01222 369 TIGRFAM caca2: calcium/proton exchanger 52 360 - -
Cpe08g01222 369 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 358 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe08g01222 369 Pfam Sodium/calcium exchanger protein 86 244 IPR004837 GO:0016021|GO:0055085
Cpe08g01222 369 Pfam Sodium/calcium exchanger protein 276 356 IPR004837 GO:0016021|GO:0055085
Cpe08g01222 369 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 19 358 - -
Cpe08g01222 369 Gene3D - 258 366 IPR044880 -
Cpe08g01222 369 Gene3D - 116 250 IPR044880 -
Cpe08g01222 369 TIGRFAM cax: calcium/proton exchanger 70 359 IPR004798 GO:0006816|GO:0015369
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g01222 Cpe19g00283 CCT
Cpe08g01222 Cpe19g00283 ECH
Cpe08g01222 Cpe10g00953 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01178 Cpe-Chr2:10703036 Cpe08g01222 Cpe-Chr8:8906933 1.91E-55 dispersed
Cpe08g01222 Cpe-Chr8:8906933 Cpe16g00366 Cpe-Chr16:5336225 2.07E-95 dispersed
Cpe10g00953 Cpe-Chr10:5356035 Cpe08g01222 Cpe-Chr8:8906933 2.59E-141 wgd
Cpe19g00283 Cpe-Chr19:2455207 Cpe08g01222 Cpe-Chr8:8906933 5.52E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01222 K07300 - csv:101213176 508.064