Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01222 | ATGGATTTCGAACAAGAAACGCCGATCTTGCAAAACGGCGCCGTCAAGAGTTCGCTGATCGGTCGGACGGCTCACAACATGTCGTCGTCATCGCTGCGGAGAAAGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGTTGTCTTAGGCTGTTGCTTGTGAATCTTCAAGAGGTCATTTTGGGAACGAAGATTTGGTTTCTTTTTCCGGCGATTCCGTTGGCTGTGTTGGCCGACTCTCTTGGCTTCGGAAGAGCGTGGGTTTTCGTTCTGAGCTTATTGGGGCTTGCTCCACTTGCGGAACGCCTGAGCTTTCTGACGGAACAAATCTCATATTTCACCGGCCCCACAATTGGTGGCTTATTAAATGCGACATGTGGCAATGCGACGGAGCTAATTATAGCAATATTTGCACTTAGCAAGGACAAAATCGAGTTGGTGAAGTACTCTCTTTTGGGATCGGTTCTATCAAACCTTCTGGTCGTTCTTGGAACCTCGCTTTTCATTGGTGGCATCGTCAACCTTAAAAGACAACAAACCTATGACCAAAGACAAGCTGAGGTGAACTCACACATGTTGTTGTTGGCGCTTTTATGTCATTTGCTTCCAATGTTGTTCCCTTATGTCAGAGGGTCTACTGATGTGGTTGTAGCTGACGCACTGCGATTGTCTAGAGCAAGTAGTATAGTAATGTTGGTGGCTTACGTAGCTTACTTGATCTTTCAACTATGGACTCACCGTGGATTTTTTGAACCAGATAAGGAACTAGATGTATACAACGACGACGTTGTGCAAGAAGCACCAACGATTGGAATATGGAGCACAGTGGCTTGGTTGGTAGGCGTTACTGTTCTCATTGCTTTGTTGTCGGAGTACGTGGTGGCTACAATTGAGGACGCTTCGAAAAGTTGGGGGCTATCGGTTACGTTCCTTAGCATGATATTACTACCACTGGTTGGAAATGCAGCCGAGCACGCAGGAGCTCTCATATTTGCTTATAAGAACAAGTTGGATATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGATGAGGTTACTATCGTCCATTCCCAATTATCGAGAGTTCAACTGA | 1110 | 45.68 | MDFEQETPILQNGAVKSSLIGRTAHNMSSSSLRRKSDLTLVSKVRFGCLRLLLVNLQEVILGTKIWFLFPAIPLAVLADSLGFGRAWVFVLSLLGLAPLAERLSFLTEQISYFTGPTIGGLLNATCGNATELIIAIFALSKDKIELVKYSLLGSVLSNLLVVLGTSLFIGGIVNLKRQQTYDQRQAEVNSHMLLLALLCHLLPMLFPYVRGSTDVVVADALRLSRASSIVMLVAYVAYLIFQLWTHRGFFEPDKELDVYNDDVVQEAPTIGIWSTVAWLVGVTVLIALLSEYVVATIEDASKSWGLSVTFLSMILLPLVGNAAEHAGALIFAYKNKLDITLGVALGSATQIAMFVMRLLSSIPNYREFN | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8906933 | 8909411 | - | Cp4.1LG08g12160.1 | Cpe08g01222 | 474188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01222 | 369 | TIGRFAM | caca2: calcium/proton exchanger | 52 | 360 | - | - | |
Cpe08g01222 | 369 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 19 | 358 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Cpe08g01222 | 369 | Pfam | Sodium/calcium exchanger protein | 86 | 244 | IPR004837 | GO:0016021|GO:0055085 | |
Cpe08g01222 | 369 | Pfam | Sodium/calcium exchanger protein | 276 | 356 | IPR004837 | GO:0016021|GO:0055085 | |
Cpe08g01222 | 369 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER 3 | 19 | 358 | - | - | |
Cpe08g01222 | 369 | Gene3D | - | 258 | 366 | IPR044880 | - | |
Cpe08g01222 | 369 | Gene3D | - | 116 | 250 | IPR044880 | - | |
Cpe08g01222 | 369 | TIGRFAM | cax: calcium/proton exchanger | 70 | 359 | IPR004798 | GO:0006816|GO:0015369 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g01222 | Cpe19g00283 | CCT | |
Cpe08g01222 | Cpe19g00283 | ECH | |
Cpe08g01222 | Cpe10g00953 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01178 | Cpe-Chr2:10703036 | Cpe08g01222 | Cpe-Chr8:8906933 | 1.91E-55 | dispersed | |
Cpe08g01222 | Cpe-Chr8:8906933 | Cpe16g00366 | Cpe-Chr16:5336225 | 2.07E-95 | dispersed | |
Cpe10g00953 | Cpe-Chr10:5356035 | Cpe08g01222 | Cpe-Chr8:8906933 | 2.59E-141 | wgd | |
Cpe19g00283 | Cpe-Chr19:2455207 | Cpe08g01222 | Cpe-Chr8:8906933 | 5.52E-147 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01222 | K07300 | - | csv:101213176 | 508.064 |