Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01225 | ATGGAAATGCCATCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTTTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACATGGGAAGTTGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGGGATGGCATGAACAGAAAAGATTGGCTGTCTCTAGTGGCTGTACACAGTGATTCCTGGTTGCTCTCGGTGGCTTTCTATCTTGGATCAAGGCTTAAGCAAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAATGGAAGCCTGTCAAAGAGAAACCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAACGATGGGCAGGTGAAAAGCAATCCTAAACTTGCCAGACGAAGTATCGAGGAGGATGTCGGCGAACATAGCAAAACCCTCTGTGGTAGCTGTGGTGAAAACAGTACAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCACGGAAAGTGCGTAAACATAACACCTGCTAAGGCTGATTGTATCCAACGATACAAATGTTCATTTTGCTGCATGAAGAAATGCAGGCAGTAG | 720 | 45.97 | MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGSRLKQNERKRLFSLMNDLPTVFEVVTEWKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLARRSIEEDVGEHSKTLCGSCGENSTDEFWIGCDICERWYHGKCVNITPAKADCIQRYKCSFCCMKKCRQ | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8916056 | 8918517 | + | Cp4.1LG08g12280.1 | Cpe08g01225 | 474191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01225 | 239 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
| Cpe08g01225 | 239 | MobiDBLite | consensus disorder prediction | 146 | 167 | - | - | |
| Cpe08g01225 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 232 | IPR019786 | - | |
| Cpe08g01225 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 233 | IPR013083 | - | |
| Cpe08g01225 | 239 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE | 5 | 239 | - | - | |
| Cpe08g01225 | 239 | CDD | PHD_AL_plant | 186 | 235 | IPR044104 | - | |
| Cpe08g01225 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 175 | 236 | IPR011011 | - | |
| Cpe08g01225 | 239 | PANTHER | CPG BINDING PROTEIN | 5 | 239 | IPR045104 | GO:0006355|GO:0042393 | |
| Cpe08g01225 | 239 | MobiDBLite | consensus disorder prediction | 142 | 177 | - | - | |
| Cpe08g01225 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 235 | IPR019787 | - | |
| Cpe08g01225 | 239 | Pfam | PHD-finger | 187 | 233 | IPR019787 | - | |
| Cpe08g01225 | 239 | SMART | PHD_3 | 186 | 233 | IPR001965 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00051 | Cpe08g01225 | CCT | |
| Cpe03g00051 | Cpe08g01225 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01225 | Cpe-Chr8:8916056 | Cpe17g00469 | Cpe-Chr17:3498302 | 3.26E-88 | dispersed | |
| Cpe01g01035 | Cpe-Chr1:6128234 | Cpe08g01225 | Cpe-Chr8:8916056 | 2.67E-95 | wgd | |
| Cpe01g00130 | Cpe-Chr1:750940 | Cpe08g01225 | Cpe-Chr8:8916056 | 2.46E-112 | wgd | |
| Cpe03g00051 | Cpe-Chr3:277286 | Cpe08g01225 | Cpe-Chr8:8916056 | 6.57E-145 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49925 | PF12165 | Alfin | 4.90E-66 | No_clan | Cpe | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01225 | - | - | csv:101211970 | 426.017 |