Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01227 ATGGAAGGCCACAATCCCCATCCCCTTGTTCATCTCCACCTTCAGCAGCAACAACATCAACAGCTTCAACATCCTCCGCCGCCACCGCCGCCGCAGCAGCAGCAGCATCTCCACCAAAACCTCGCCGATCAAACCGCCGTCAACGCCGTCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTAATGATCCGCGCCGAGCTGGATCAACGGTTCATGGAGACCAAACGCAACAAACTCTTGTGGGAAATCACCGCCGCCAAAATGAAAGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTCACCCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGCTACAAGCAATTTTCGGGGCACGAATGCATAGAATATTATGGGCGGAGGCGGAGAGCGGAGGGAGTGGATCGAAGAAGAAGACGACGGTGTTATCGTCCGATGAAGATGACGAGAACGAGGACAGTGACGGGGACGGAGGCGACACGAAAGCGAGCGGTAGGAAGAGTAAAAGGAAGGGTAAAGGTAACGGCGGGGGAAGCAGTAGTATCAATCATTTGAAGGAAATTTTAGAAGATTTCATGAACCAACAAATTCAAATGGAGATTCAATGGAGGGAAGCGTTTGAATCAAGGGAAAAAGAGAGACAAATTAGGGAAATGGAATGGAGAAGGAAAATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGGGAAGAACAAAGAAGAATGAGAGATGAAGTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATATAG 897 46.38 MEGHNPHPLVHLHLQQQQHQQLQHPPPPPPPQQQQHLHQNLADQTAVNAVADRFPQWSIQETKEFLMIRAELDQRFMETKRNKLLWEITAAKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMHRILWAEAESGGSGSKKKTTVLSSDEDDENEDSDGDGGDTKASGRKSKRKGKGNGGGSSSINHLKEILEDFMNQQIQMEIQWREAFESREKERQIREMEWRRKMEALEHERIMLERRWREREEQRRMRDEVRAEKRDALITALLNKLRRDDHI 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8927691 8929106 + Cp4.1LG08g12260.1 Cpe08g01227 474193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01227 298 MobiDBLite consensus disorder prediction 14 35 - -
Cpe08g01227 298 Pfam Myb/SANT-like DNA-binding domain 56 140 IPR044822 -
Cpe08g01227 298 Gene3D - 57 118 - -
Cpe08g01227 298 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 31 295 - -
Cpe08g01227 298 ProSiteProfiles Myb-like domain profile. 57 113 IPR001005 -
Cpe08g01227 298 MobiDBLite consensus disorder prediction 154 206 - -
Cpe08g01227 298 CDD GT1 55 120 - -
Cpe08g01227 298 PANTHER - 31 295 - -
Cpe08g01227 298 Coils Coil 242 269 - -
Cpe08g01227 298 SUPERFAMILY beta-sandwich domain of Sec23/24 4 61 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00048 Cpe08g01227 CCT
Cpe08g01227 Cpe10g00956 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00047 Cpe-Chr7:224772 Cpe08g01227 Cpe-Chr8:8927691 5.79E-12 dispersed
Cpe08g01227 Cpe-Chr8:8927691 Cpe03g00245 Cpe-Chr3:1218733 2.03E-13 dispersed
Cpe01g00526 Cpe-Chr1:3024161 Cpe08g01227 Cpe-Chr8:8927691 9.70E-40 transposed
Cpe10g00956 Cpe-Chr10:5403241 Cpe08g01227 Cpe-Chr8:8927691 4.49E-63 wgd
Cpe03g00048 Cpe-Chr3:258925 Cpe08g01227 Cpe-Chr8:8927691 1.26E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49926 PF13837 Myb_DNA-bind_4 8.10E-19 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01227 - - csv:101211490 402.134