Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01227 | ATGGAAGGCCACAATCCCCATCCCCTTGTTCATCTCCACCTTCAGCAGCAACAACATCAACAGCTTCAACATCCTCCGCCGCCACCGCCGCCGCAGCAGCAGCAGCATCTCCACCAAAACCTCGCCGATCAAACCGCCGTCAACGCCGTCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTAATGATCCGCGCCGAGCTGGATCAACGGTTCATGGAGACCAAACGCAACAAACTCTTGTGGGAAATCACCGCCGCCAAAATGAAAGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTCACCCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGCTACAAGCAATTTTCGGGGCACGAATGCATAGAATATTATGGGCGGAGGCGGAGAGCGGAGGGAGTGGATCGAAGAAGAAGACGACGGTGTTATCGTCCGATGAAGATGACGAGAACGAGGACAGTGACGGGGACGGAGGCGACACGAAAGCGAGCGGTAGGAAGAGTAAAAGGAAGGGTAAAGGTAACGGCGGGGGAAGCAGTAGTATCAATCATTTGAAGGAAATTTTAGAAGATTTCATGAACCAACAAATTCAAATGGAGATTCAATGGAGGGAAGCGTTTGAATCAAGGGAAAAAGAGAGACAAATTAGGGAAATGGAATGGAGAAGGAAAATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGGGAAGAACAAAGAAGAATGAGAGATGAAGTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATATAG | 897 | 46.38 | MEGHNPHPLVHLHLQQQQHQQLQHPPPPPPPQQQQHLHQNLADQTAVNAVADRFPQWSIQETKEFLMIRAELDQRFMETKRNKLLWEITAAKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMHRILWAEAESGGSGSKKKTTVLSSDEDDENEDSDGDGGDTKASGRKSKRKGKGNGGGSSSINHLKEILEDFMNQQIQMEIQWREAFESREKERQIREMEWRRKMEALEHERIMLERRWREREEQRRMRDEVRAEKRDALITALLNKLRRDDHI | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8927691 | 8929106 | + | Cp4.1LG08g12260.1 | Cpe08g01227 | 474193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01227 | 298 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
Cpe08g01227 | 298 | Pfam | Myb/SANT-like DNA-binding domain | 56 | 140 | IPR044822 | - | |
Cpe08g01227 | 298 | Gene3D | - | 57 | 118 | - | - | |
Cpe08g01227 | 298 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 31 | 295 | - | - | |
Cpe08g01227 | 298 | ProSiteProfiles | Myb-like domain profile. | 57 | 113 | IPR001005 | - | |
Cpe08g01227 | 298 | MobiDBLite | consensus disorder prediction | 154 | 206 | - | - | |
Cpe08g01227 | 298 | CDD | GT1 | 55 | 120 | - | - | |
Cpe08g01227 | 298 | PANTHER | - | 31 | 295 | - | - | |
Cpe08g01227 | 298 | Coils | Coil | 242 | 269 | - | - | |
Cpe08g01227 | 298 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 4 | 61 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00048 | Cpe08g01227 | CCT | |
Cpe08g01227 | Cpe10g00956 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00047 | Cpe-Chr7:224772 | Cpe08g01227 | Cpe-Chr8:8927691 | 5.79E-12 | dispersed | |
Cpe08g01227 | Cpe-Chr8:8927691 | Cpe03g00245 | Cpe-Chr3:1218733 | 2.03E-13 | dispersed | |
Cpe01g00526 | Cpe-Chr1:3024161 | Cpe08g01227 | Cpe-Chr8:8927691 | 9.70E-40 | transposed | |
Cpe10g00956 | Cpe-Chr10:5403241 | Cpe08g01227 | Cpe-Chr8:8927691 | 4.49E-63 | wgd | |
Cpe03g00048 | Cpe-Chr3:258925 | Cpe08g01227 | Cpe-Chr8:8927691 | 1.26E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49926 | PF13837 | Myb_DNA-bind_4 | 8.10E-19 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01227 | - | - | csv:101211490 | 402.134 |