Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01238 ATGAACAACACCGCCCCGCCGGTAGACATGGCCACCGGAACTCCGCCGTGGCTGAACACCGGCGACAACTCTTGGCAGATCACAGCCTCCACTTTGGTCGGACTTCAGAGCATGCCCGGCCTTGTAATTCTCTACGCAAGCATCGTTAAAAAGAAATGGGCCGTGAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTTCTGGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGATTCCTCTGTGGGGTAAAGGGATTCCAGCTCTGGAGCAAAGTTACCTAATTGACCGAGCCAATATCCCTGAAAGTGGCCATGTAAGCCACGACGGAAGGGTAACGCCGAGAATTGAGCCGAATATTCCGATGGCTTCTCTGGTGTATTTCCAGTTCACCTTTGCTGCGATTACTGTGATTTTACTTGCAGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCCTACACCGTCGGCGCCTACACGATCTGGGGCGGAGGGTTCCTCTTCCAATGGGGCGTGATTGATTACTCCGGCGGCTTTGTTATTCATCTTTCTTCTGGAATTTCTGGCTTAACCGCCGCTTATTGGGTTGGGCCGAGGATTAAAAGCGACAGAGAGAGGTTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCACCGCACTCAGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTGAGTGCAGCGACGAGCCTGCTGGTGTGGACCATCTTGGATGTGTTCTACTTCGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCAGCTATTATAATGGGAGTTATGGGAGGGAGTATTCCATGGGTATCTATGATGATTCTCCATAAAAAGTTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCGGGAATGATGGGCGGGCTTCTAACGGGCCTTTTAGCAGAGCCCACTCTATGCGAACTATACCTACCGATCCCCGACAGCCGGGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAGCAGCTGGCCGGAGCCATGTTCATAATCGGATGGAACATCGTCTCCACCACCATTATTCTCCTCTTCATTCGGCTGTTTATGCCGTTGCGGATGCCGGACGAGGAACTCATGATCGGAGACGACGCCGTCCACGGCGAGGAAGCTTATGCCCTGTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGGAATGCGGCGGCGAATGTGGAAGAAGGAACTTCCCCGCCTTATATCAATGGTGCCAGAGGAGTAACCATCACTTTGTAA 1464 53.62 MNNTAPPVDMATGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDQLIPLWGKGIPALEQSYLIDRANIPESGHVSHDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTIWGGGFLFQWGVIDYSGGFVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVMGGSIPWVSMMILHKKLSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDSRGAFYGKNGGVQFLKQLAGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTSPPYINGARGVTITL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8977126 8979667 - Cp4.1LG08g12370.1 Cpe08g01238 474204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01238 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Cpe08g01238 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Cpe08g01238 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Cpe08g01238 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Cpe08g01238 487 PANTHER AMMONIUM TRANSPORTER 2 11 484 - -
Cpe08g01238 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe08g01238 487 TIGRFAM amt: ammonium transporter 22 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe08g01238 487 Gene3D Ammonium transporter AmtB like domains 3 450 IPR029020 -
Cpe08g01238 487 SUPERFAMILY Ammonium transporter 17 429 - -
Cpe08g01238 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cpe08g01238 487 PANTHER AMMONIUM TRANSPORTER MEP2 11 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00817 Cpe-Chr7:7351775 Cpe08g01238 Cpe-Chr8:8977126 1.13E-21 dispersed
Cpe08g01238 Cpe-Chr8:8977126 Cpe17g00239 Cpe-Chr17:1548409 9.09E-22 dispersed
Cpe10g00697 Cpe-Chr10:4006149 Cpe08g01238 Cpe-Chr8:8977126 1.89E-177 transposed
Cpe11g00346 Cpe-Chr11:1878520 Cpe08g01238 Cpe-Chr8:8977126 0 transposed
Cpe03g00039 Cpe-Chr3:202500 Cpe08g01238 Cpe-Chr8:8977126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01238 K03320 - csv:101207321 884.404