Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01262 ATGATTTTCAAACTATTTCTCCTTCTTCTCTTAGCTCCTGCTGCTGTTCATTGTTTAGACACTGTTTTCAACGATGATGTTCTCGGATTGATAGTCTTCAAAGCAGGCCTTCAAGATCCATTGGGTAAACTGATATCATGGAATGAAGAAGATGATACCCCCTGCAATTGGTTTGGTATCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGATTGTTCTTGATGGCTTCTCTTTGTCTGGCCACATCGATCGTGGCCTTCTCAGGTTACAGTTTCTTCAAATACTCTCACTTGCTAACAACAATTTCACTGGCTCAATCAACTCTGCTCTTGCTCATCTTACAAGCTTACAAGTTCTTGATTTGAGTGACAACAGTTTATCAGGATCCATCCCTGAACAGCTCTTCCTGCAATGTGGATCAATAAGAGTCATTTCCTTTGCCAGAAACAATCTCACAGGACAAATCCCACAATCCTTAGCCTCATGCTTTTCTCTAGAGATTCTAAACTTTTCATCAAATCATTTATCTGGGAAATTGCCATCTGGGTTATGGTATTTGAGAGGGATTCAATCACTAGATTTCTCAAACAACTTGCTTGAAGGGCAGATTCCTTCTGGGATTCAAAGTTTATATGATTTGAGATTGGTTAACTTACAGAAGAATCGTTTTTCTGGAAGGGTTCCTGAGGATATTGGTGGCTGTTTGTTTTTGAAATCAATTGATTTTAGTGATAATATCCTTTCTGGGGTGCTTCCAGAATCAATGCAGATGCTTAGTTCTTGCAGTTATTTGAATTTACGAGGGAATTCTCTGATGGGTGAAGTTCCTCGTTGGGTTGGAGAGCTTAAAAATCTTGAGATTTTGGATCTTTCTGCTAATAACTTCTCTGGTCAAGTGCCAAGTTCAATAGGAAATCTTCAATTGTTGAAGAACTTGAATGTTTCCATGAACTATTTTACTGGGAACTTGCCTGAATCCATGGCGGATTGTAAGAATCTTTTGAGTATTGATGCTAGCCATAATCATTTGAATGGGTATCTCCCAGCTAATGTTGGAGAGCTTAGGAACTTGCAGTTGCTGAATTTATCAAGAAACCATTTCGTGGGTTCTGTTCCTGATAGTATTGGTGAGCTAAAATCAGTATATGTTCTTGACTTCAGTGATAATCAATTGAATGGAAGTGTTCCTGTTGAAATTGGAGGAGCTATCTCACTCAAGGAGTTGTGGCTGGAGAGGAACTTACTCACCGGGGAAATTCCTATCTCCATTGACAAATGCTCGTTGTTAACATCATTGATGGTTTCTCACAACAATCTCACAGGCACAATTCCTGCTGCTCTTGCAAATCTCTCCAACCTTCAAAACGTAGACTTGTCTTTCAACAAACTCACTGGAAGCCTGCCCAAGGAGCTCACCAATCTTTCCCACCTCCTATCCTTTAACATCTCCCACAATCACCTTAATGGAGAGCTCCCAGCTGGGGGCTTCTTCAACACCATATCTCCCTTCTCCATTTCACATAACCCATCTCTTTGTGGTGCTGTCGTCAACCGGTCCTGCCCCTCCGTCCACCCGAAACCAATCGTCCTAAACCCGAACTCTTCCGATACCAACGCCAATTCCCCCTCCCACAAGCATCACCATGAGATAATACTAAGCATATCATCCATCATTGCTATTGGTGCAGCTTCTTTTATCTTACTTGGTGTGGTAGCTGTGAGTATCCTTAACATCCGTGCAAGGTCCTCACAGGCACGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAACTGCTCCCCAAAAACTAACCCAGACTATGGAAAGCTAGTCATGTTTTCAGGAGATGCAGAGTTTGTGTTTGGTGCTCAAGCATTGTTGAATAAGGATTGCGAGCTCGGTCGAGGCGGGTTTGGAGTTGTTTACAGAACCGCGCTTCGAGACGGTTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGCTTGATAAAGTCCCAAGAGGATTTTGAGAGTGAAGTGAAGAAGCTGGGGCAGATCAGGCATCATAATCTGGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATCTATGAACATGTCCAAAATGGAAGCTTGTATAAACATCTACACGACCGAACGAGCGACGATTGCTTGTCGTGGCAGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGGTTGGCTTATTTGCACCAGAATGATATAATTCATTACAATTTGAAGTCGACCAATGTCTTGATAGACAGTTCTGGGACACCAAAAGTGGGGGACTATGGCTTGGCAAGGCTGCTGCCAATGTTGGACCGTTGCATCTTAAGCAGCAAAATCCAAAGTGCTTTGGGCTATATGGCTCCAGAGTTTGCCTGCAAAACAGTAACTATAACTGAGAAATGTGATGTGTATGGCTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATCGTGAGGGCGGCTTTGGACGATGGCACAGTCGAGCAATGTGTCGATGAGAGGCTTCGATCGAACTTCCGTGTTGAGGAGGCCGTTCCTGTGATGAAACTTGGTTTGATATGTGCTTCTCAAGTGCCATCTAACAGGCCAGATATGAACGAGGTTGTCAATATATTAGAGATGATCCAATCCCCATGTGAAGCTGAGGAGGGCTTGGAATGA 2739 43.08 MIFKLFLLLLLAPAAVHCLDTVFNDDVLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTNRVSEIVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGSINSALAHLTSLQVLDLSDNSLSGSIPEQLFLQCGSIRVISFARNNLTGQIPQSLASCFSLEILNFSSNHLSGKLPSGLWYLRGIQSLDFSNNLLEGQIPSGIQSLYDLRLVNLQKNRFSGRVPEDIGGCLFLKSIDFSDNILSGVLPESMQMLSSCSYLNLRGNSLMGEVPRWVGELKNLEILDLSANNFSGQVPSSIGNLQLLKNLNVSMNYFTGNLPESMADCKNLLSIDASHNHLNGYLPANVGELRNLQLLNLSRNHFVGSVPDSIGELKSVYVLDFSDNQLNGSVPVEIGGAISLKELWLERNLLTGEIPISIDKCSLLTSLMVSHNNLTGTIPAALANLSNLQNVDLSFNKLTGSLPKELTNLSHLLSFNISHNHLNGELPAGGFFNTISPFSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNANSPSHKHHHEIILSISSIIAIGAASFILLGVVAVSILNIRARSSQARSAALALSAGEDFNCSPKTNPDYGKLVMFSGDAEFVFGAQALLNKDCELGRGGFGVVYRTALRDGCLVAIKKLTVTSLIKSQEDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEHVQNGSLYKHLHDRTSDDCLSWQQRFKIVLGMAKGLAYLHQNDIIHYNLKSTNVLIDSSGTPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDIVRAALDDGTVEQCVDERLRSNFRVEEAVPVMKLGLICASQVPSNRPDMNEVVNILEMIQSPCEAEEGLE 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9123959 9127657 - Cp4.1LG08g12680.1 Cpe08g01262 474228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01262 912 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Cpe08g01262 912 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Cpe08g01262 912 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515
Cpe08g01262 912 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cpe08g01262 912 ProSiteProfiles Protein kinase domain profile. 629 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01262 912 Gene3D Phosphorylase Kinase; domain 1 623 705 - -
Cpe08g01262 912 SUPERFAMILY L domain-like 24 278 - -
Cpe08g01262 912 CDD STKc_IRAK 635 899 - -
Cpe08g01262 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 342 903 - -
Cpe08g01262 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 349 - -
Cpe08g01262 912 PRINTS Leucine-rich repeat signature 117 130 - -
Cpe08g01262 912 PRINTS Leucine-rich repeat signature 283 296 - -
Cpe08g01262 912 Pfam Protein tyrosine and serine/threonine kinase 631 897 IPR001245 GO:0004672|GO:0006468
Cpe08g01262 912 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515
Cpe08g01262 912 SMART LRR_typ_2 90 113 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 355 379 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 187 210 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 114 138 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 283 307 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 475 499 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 211 235 IPR003591 -
Cpe08g01262 912 SMART LRR_typ_2 451 474 IPR003591 -
Cpe08g01262 912 SUPERFAMILY L domain-like 259 514 - -
Cpe08g01262 912 Gene3D Ribonuclease Inhibitor 184 309 IPR032675 -
Cpe08g01262 912 Gene3D Ribonuclease Inhibitor 310 527 IPR032675 -
Cpe08g01262 912 Gene3D Transferase(Phosphotransferase) domain 1 706 909 - -
Cpe08g01262 912 SUPERFAMILY Protein kinase-like (PK-like) 632 904 IPR011009 -
Cpe08g01262 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 342 903 - -
Cpe08g01262 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 349 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00011 Cpe08g01262 CCT
Cpe03g00011 Cpe08g01262 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01262 Cpe-Chr8:9123959 Cpe05g00090 Cpe-Chr5:430776 8.79E-126 dispersed
Cpe03g01247 Cpe-Chr3:10112947 Cpe08g01262 Cpe-Chr8:9123959 6.00E-26 transposed
Cpe08g00782 Cpe-Chr8:6229489 Cpe08g01262 Cpe-Chr8:9123959 1.71E-172 transposed
Cpe01g00084 Cpe-Chr1:504888 Cpe08g01262 Cpe-Chr8:9123959 0 wgd
Cpe13g01035 Cpe-Chr13:8499842 Cpe08g01262 Cpe-Chr8:9123959 0 wgd
Cpe03g00011 Cpe-Chr3:53564 Cpe08g01262 Cpe-Chr8:9123959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62573 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01262 - - csv:101222148 1448.34