Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01273 CTTCCCCACAACGTGATTGTCAAAGCGACCGTGCCATTCAAATCAACGCGCCATCTCCCCAACCTCCGCCTCCGCCCCTTCTTAAATTCCCTCACCTTCCCACCCAAATCCTTCATTTATTCCGGCTCCCCTGTTTCCTCCTCCCCTGTTACCTCCTCCCCTGTTTCCTCCTCCCCTGTTTCCTCCTCCCCTGTTTCCTCCTCCCCTGTTTCCTCCTCCCCTGTTTCCTCCTCCCCTGTTTCCTCCCCTGTCTCCTCCCCTAACACAAACCACAAGCAAAGCCACCTCAATAATCCCATCTTAATGGCCAAACTAACCAAAACCCACCTCAAATTTTGGCTGTTTATGCTGCTGATCCTCTTCCCCATGGCTCCGGCGGCGGATCTTGAACAAACAGAGTGCTTAAAAGTCCCCTCCTCGGAGTTCTCCAACTCTGTTCTCTCCACCATCGGCGTCGTGCGCCAGGTCATGCTCATTTTCTCTCCGTTCACTAAATTTCTCGGGGATTCCCGCCTTTCCACCGCCATTTCCGACTGTCTCGATTTGCTGGATTCTTCTTCCGACCAGTTGAGCTGGTCGCTCTCCGCCGCCCAAAACCCAAAGGCTAAGAACAACAGCACCGGAGATCTGAGCTCTGATCTGAAAACATGGCTGAGCGCCGCCGGAGTTAACCCAGAAACATGCATGGAAGGATTCGAAGGCACCAATAGCATTGTCAAAGGATTAGTTTCCGAAGGCATCAACCAATTAACTTCACAGGTTTATAACCTTCTTTCCATGGTGAAATCGATCTCCAATCAGCCGGCCGGAAAAGGGGAGAGCAAGTTTCCCGCCTGGCTCAAAACGGAGGAACAGAGCCTGCTGCAACAAAATGACTTCGCCGCCGATGCGACTGTGGCCGCCGATGGGACAGGGGATTTCACCACCGTAATGGAGGCGGTGCTGGCAGCCCCCGACAAGAGCATGCGGCGGTATGTGATATACGTGAAAAAGGGTGTGTATTTCGAGAACGTCGAGATCAAGAAGAAGAAATGGAATATCATGATGATCGGAGATGGCATTGACGCCACCGTCATATCCGGTAACCGGAGCTTCATCGACGGCTGGACGACGTTCCGATCAGCCACCTTCGGTAACCCTTTAACTCTCTCTTCCACTTTGATTTGA 1167 52.61 LPHNVIVKATVPFKSTRHLPNLRLRPFLNSLTFPPKSFIYSGSPVSSSPVTSSPVSSSPVSSSPVSSSPVSSSPVSSSPVSSPVSSPNTNHKQSHLNNPILMAKLTKTHLKFWLFMLLILFPMAPAADLEQTECLKVPSSEFSNSVLSTIGVVRQVMLIFSPFTKFLGDSRLSTAISDCLDLLDSSSDQLSWSLSAAQNPKAKNNSTGDLSSDLKTWLSAAGVNPETCMEGFEGTNSIVKGLVSEGINQLTSQVYNLLSMVKSISNQPAGKGESKFPAWLKTEEQSLLQQNDFAADATVAADGTGDFTTVMEAVLAAPDKSMRRYVIYVKKGVYFENVEIKKKKWNIMMIGDGIDATVISGNRSFIDGWTTFRSATFGNPLTLSSTLI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9206612 9207860 + Cp4.1LG08g12640.1 Cpe08g01273 474239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01273 388 CDD PMEI-like_4 108 265 - -
Cpe08g01273 388 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 155 265 IPR035513 -
Cpe08g01273 388 Pfam Pectinesterase 296 378 IPR000070 GO:0030599|GO:0042545
Cpe08g01273 388 Pfam Plant invertase/pectin methylesterase inhibitor 174 259 IPR006501 GO:0004857
Cpe08g01273 388 SMART PMEI_2 125 264 IPR006501 GO:0004857
Cpe08g01273 388 SUPERFAMILY Pectin lyase-like 294 377 IPR011050 -
Cpe08g01273 388 MobiDBLite consensus disorder prediction 51 95 - -
Cpe08g01273 388 PANTHER PECTINESTERASE 135 377 - -
Cpe08g01273 388 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 135 377 - -
Cpe08g01273 388 Gene3D Invertase/pectin methylesterase inhibitor family protein 140 267 IPR035513 -
Cpe08g01273 388 Gene3D - 290 382 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00473 Cpe-Chr8:3029761 Cpe08g01273 Cpe-Chr8:9206612 1.17E-35 dispersed
Cpe08g01273 Cpe-Chr8:9206612 Cpe18g00040 Cpe-Chr18:906060 2.74E-49 dispersed
Cpe08g01273 Cpe-Chr8:9206612 Cpe12g00550 Cpe-Chr12:5615632 2.66E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01273 K01051 - csv:101207185 404.445