Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01275 ATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCTTGGATCATGACCAAGACTTGGTTAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCCCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTACATTCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAATGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATACGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTGCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCAGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGCGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGCGTTCCATTTGAACAGCTGGAATGA 1533 45.21 MCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKIDSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPLDHDQDLVKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHSSLDAEAFGMPETKMGSLDDASTASHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNTNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTACKLWRQVGESFKPPKTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9220943 9227214 + Cp4.1LG08g12750.1 Cpe08g01275 474241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01275 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Cpe08g01275 510 SMART ARID_2 212 302 - -
Cpe08g01275 510 Gene3D - 406 510 IPR008978 -
Cpe08g01275 510 CDD ARID 220 302 - -
Cpe08g01275 510 SMART bright_3 216 307 IPR001606 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 1 115 - -
Cpe08g01275 510 Pfam ARID/BRIGHT DNA binding domain 218 302 IPR001606 GO:0003677
Cpe08g01275 510 Gene3D - 215 312 IPR036431 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 141 164 - -
Cpe08g01275 510 MobiDBLite consensus disorder prediction 88 110 - -
Cpe08g01275 510 CDD ACD_sHsps_p23-like 429 505 - -
Cpe08g01275 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Cpe08g01275 510 ProSiteProfiles ARID domain profile. 215 306 IPR001606 GO:0003677
Cpe08g01275 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Cpe08g01275 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 14 508 IPR045147 GO:0006357
Cpe08g01275 510 SUPERFAMILY ARID-like 210 316 IPR036431 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 67 84 - -
Cpe08g01275 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 14 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01275 Cpe-Chr8:9220943 Cpe17g00251 Cpe-Chr17:1660205 5.90E-08 dispersed
Cpe14g01071 Cpe-Chr14:8914368 Cpe08g01275 Cpe-Chr8:9220943 0 wgd
Cpe02g00012 Cpe-Chr2:85595 Cpe08g01275 Cpe-Chr8:9220943 7.37E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49930 PF00011 HSP20 8.40E-06 CL0190 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01275 - - bhj:120091028 838.565