Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01275 | ATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCTTGGATCATGACCAAGACTTGGTTAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCCCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTACATTCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAATGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATACGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTGCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCAGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGCGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGCGTTCCATTTGAACAGCTGGAATGA | 1533 | 45.21 | MCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKIDSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPLDHDQDLVKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHSSLDAEAFGMPETKMGSLDDASTASHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNTNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTACKLWRQVGESFKPPKTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 510 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9220943 | 9227214 | + | Cp4.1LG08g12750.1 | Cpe08g01275 | 474241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01275 | 510 | Pfam | Hsp20/alpha crystallin family | 427 | 507 | IPR002068 | - | |
Cpe08g01275 | 510 | SMART | ARID_2 | 212 | 302 | - | - | |
Cpe08g01275 | 510 | Gene3D | - | 406 | 510 | IPR008978 | - | |
Cpe08g01275 | 510 | CDD | ARID | 220 | 302 | - | - | |
Cpe08g01275 | 510 | SMART | bright_3 | 216 | 307 | IPR001606 | GO:0003677 | |
Cpe08g01275 | 510 | MobiDBLite | consensus disorder prediction | 1 | 115 | - | - | |
Cpe08g01275 | 510 | Pfam | ARID/BRIGHT DNA binding domain | 218 | 302 | IPR001606 | GO:0003677 | |
Cpe08g01275 | 510 | Gene3D | - | 215 | 312 | IPR036431 | GO:0003677 | |
Cpe08g01275 | 510 | MobiDBLite | consensus disorder prediction | 141 | 164 | - | - | |
Cpe08g01275 | 510 | MobiDBLite | consensus disorder prediction | 88 | 110 | - | - | |
Cpe08g01275 | 510 | CDD | ACD_sHsps_p23-like | 429 | 505 | - | - | |
Cpe08g01275 | 510 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 410 | 510 | IPR002068 | - | |
Cpe08g01275 | 510 | ProSiteProfiles | ARID domain profile. | 215 | 306 | IPR001606 | GO:0003677 | |
Cpe08g01275 | 510 | SUPERFAMILY | HSP20-like chaperones | 421 | 506 | IPR008978 | - | |
Cpe08g01275 | 510 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 14 | 508 | IPR045147 | GO:0006357 | |
Cpe08g01275 | 510 | SUPERFAMILY | ARID-like | 210 | 316 | IPR036431 | GO:0003677 | |
Cpe08g01275 | 510 | MobiDBLite | consensus disorder prediction | 67 | 84 | - | - | |
Cpe08g01275 | 510 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE | 14 | 508 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g01275 | Cpe-Chr8:9220943 | Cpe17g00251 | Cpe-Chr17:1660205 | 5.90E-08 | dispersed | |
Cpe14g01071 | Cpe-Chr14:8914368 | Cpe08g01275 | Cpe-Chr8:9220943 | 0 | wgd | |
Cpe02g00012 | Cpe-Chr2:85595 | Cpe08g01275 | Cpe-Chr8:9220943 | 7.37E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49930 | PF00011 | HSP20 | 8.40E-06 | CL0190 | Cpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01275 | - | - | bhj:120091028 | 838.565 |