Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01275 ATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCTTGGATCATGACCAAGACTTGGTTAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCCCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTACATTCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAATGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATACGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTGCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCAGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGCGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGCGTTCCATTTGAACAGCTGGAATGA 1533 45.21 MCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKIDSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPLDHDQDLVKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHSSLDAEAFGMPETKMGSLDDASTASHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNTNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTACKLWRQVGESFKPPKTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9220943 9227214 + Cp4.1LG08g12750.1 Cpe08g01275 474241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01275 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Cpe08g01275 510 SMART ARID_2 212 302 - -
Cpe08g01275 510 Gene3D - 406 510 IPR008978 -
Cpe08g01275 510 CDD ARID 220 302 - -
Cpe08g01275 510 SMART bright_3 216 307 IPR001606 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 1 115 - -
Cpe08g01275 510 Pfam ARID/BRIGHT DNA binding domain 218 302 IPR001606 GO:0003677
Cpe08g01275 510 Gene3D - 215 312 IPR036431 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 141 164 - -
Cpe08g01275 510 MobiDBLite consensus disorder prediction 88 110 - -
Cpe08g01275 510 CDD ACD_sHsps_p23-like 429 505 - -
Cpe08g01275 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Cpe08g01275 510 ProSiteProfiles ARID domain profile. 215 306 IPR001606 GO:0003677
Cpe08g01275 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Cpe08g01275 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 14 508 IPR045147 GO:0006357
Cpe08g01275 510 SUPERFAMILY ARID-like 210 316 IPR036431 GO:0003677
Cpe08g01275 510 MobiDBLite consensus disorder prediction 67 84 - -
Cpe08g01275 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 14 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01275 - - - bhj:120091028 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01275 Cpe-Chr8:9220943 Cpe17g00251 Cpe-Chr17:1660205 5.90E-08 dispersed
Cpe14g01071 Cpe-Chr14:8914368 Cpe08g01275 Cpe-Chr8:9220943 0 wgd
Cpe02g00012 Cpe-Chr2:85595 Cpe08g01275 Cpe-Chr8:9220943 7.37E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49930 PF00011 HSP20 8.40E-06 CL0190 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g01275 Cpe_Chr08 FPKM 24.734554 26.917603 17.446381 16.135799 22.250694 23.409662 23.325394 12.604267 13.428693 14.196047