Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01279 ATGACTCGTTATTTCCAAGCTTTGGCGGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATAGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTGGGGCTGATAGCGGTGGCTCGATGCGCGTGGCTCCGGCGTGGCAGTAACAGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTTCAATCCCTACCGAAATTCACGTACAGAGCATCGGGGTCAGGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCCTAGACGGAGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTGGCCAGATGCCAGAAGTGCGGCGAGTTCCCGGCCGTCGTCCACGGCGGCGATCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGGTAACAACAGGGGTTTGGGATTTTTGCCTTGA 585 58.12 MTRYFQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNSGGAGNQASANRGLKKKILQSLPKFTYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNNEEEQKRREDNNGNNRGLGFLP 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9244373 9244957 - Cp4.1LG08g12810.1 Cpe08g01279 474245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01279 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Cpe08g01279 194 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cpe08g01279 194 SMART FANCL_C_2 102 156 - -
Cpe08g01279 194 SMART ring_2 106 147 IPR001841 -
Cpe08g01279 194 MobiDBLite consensus disorder prediction 170 185 - -
Cpe08g01279 194 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Cpe08g01279 194 MobiDBLite consensus disorder prediction 170 194 - -
Cpe08g01279 194 Pfam Ring finger domain 105 148 IPR001841 -
Cpe08g01279 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 180 - -
Cpe08g01279 194 SUPERFAMILY RING/U-box 105 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00008 Cpe-Chr6:29388 Cpe08g01279 Cpe-Chr8:9244373 2.59E-61 dispersed
Cpe08g01279 Cpe-Chr8:9244373 Cpe13g01038 Cpe-Chr13:8513435 2.62E-34 dispersed
Cpe12g00592 Cpe-Chr12:5930041 Cpe08g01279 Cpe-Chr8:9244373 4.82E-23 dispersed
Cpe02g00022 Cpe-Chr2:122794 Cpe08g01279 Cpe-Chr8:9244373 5.10E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01279 - - cmax:111470152 356.681