Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01305 | ATGCGGTTGTTTTCCGTCTTCTCCTTCTTAAGATCCAAGTTTTTTTGCCCTTTCTTTGAATTCCCCAATTCTTGTTTCTTTTCGATTCTCCATTTTCGACCAACCCTTTTCATTTCCATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCTTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTCTCAATTGAAGTCTTTGAATCTTCTTTAGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTAGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACGAGCTTTGACGACATCTCGAACATCTTTGACACCGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCTGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 825 | 44.0 | MRLFSVFSFLRSKFFCPFFEFPNSCFFSILHFRPTLFISMDFIANPFRLSSSSSPSFGNLFERVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9396295 | 9398220 | + | Cp4.1LG08g12920.1 | Cpe08g01305 | 474271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01305 | 274 | CDD | RING-H2_PA-TM-RING | 228 | 271 | - | - | |
Cpe08g01305 | 274 | SMART | ring_2 | 229 | 270 | IPR001841 | - | |
Cpe08g01305 | 274 | SUPERFAMILY | RING/U-box | 217 | 274 | - | - | |
Cpe08g01305 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 271 | IPR001841 | - | |
Cpe08g01305 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 47 | 274 | - | - | |
Cpe08g01305 | 274 | Pfam | Ring finger domain | 229 | 271 | IPR001841 | - | |
Cpe08g01305 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 274 | IPR013083 | - | |
Cpe08g01305 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 47 | 274 | IPR044523 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g01305 | Cpe-Chr8:9396295 | Cpe13g00847 | Cpe-Chr13:7459874 | 2.36E-17 | dispersed | |
Cpe14g01041 | Cpe-Chr14:8739340 | Cpe08g01305 | Cpe-Chr8:9396295 | 8.57E-160 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01305 | - | - | cmax:111470226 | 541.576 |