Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01305 ATGCGGTTGTTTTCCGTCTTCTCCTTCTTAAGATCCAAGTTTTTTTGCCCTTTCTTTGAATTCCCCAATTCTTGTTTCTTTTCGATTCTCCATTTTCGACCAACCCTTTTCATTTCCATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCTTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTCTCAATTGAAGTCTTTGAATCTTCTTTAGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTAGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACGAGCTTTGACGACATCTCGAACATCTTTGACACCGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCTGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA 825 44.0 MRLFSVFSFLRSKFFCPFFEFPNSCFFSILHFRPTLFISMDFIANPFRLSSSSSPSFGNLFERVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9396295 9398220 + Cp4.1LG08g12920.1 Cpe08g01305 474271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01305 274 CDD RING-H2_PA-TM-RING 228 271 - -
Cpe08g01305 274 SMART ring_2 229 270 IPR001841 -
Cpe08g01305 274 SUPERFAMILY RING/U-box 217 274 - -
Cpe08g01305 274 ProSiteProfiles Zinc finger RING-type profile. 229 271 IPR001841 -
Cpe08g01305 274 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 47 274 - -
Cpe08g01305 274 Pfam Ring finger domain 229 271 IPR001841 -
Cpe08g01305 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 274 IPR013083 -
Cpe08g01305 274 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 47 274 IPR044523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01305 Cpe-Chr8:9396295 Cpe13g00847 Cpe-Chr13:7459874 2.36E-17 dispersed
Cpe14g01041 Cpe-Chr14:8739340 Cpe08g01305 Cpe-Chr8:9396295 8.57E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01305 - - cmax:111470226 541.576