Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01314 ATGGCAGAAGAGGATACCCTCTCTGAAATTTCTGAATCTTCTTCGTCTTCTTCAGCTCTCACCTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTTTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGACGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATACAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACTGAATCGCATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGCAATATGTCTGCAAAATGGTATAGGGAACCTCTTGATCCCATTAGTGGCCAGAAGATAGGGAAAGCGAAGCAAATCCCTCCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCTGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTTACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGTGGTCCAAAGCTCACGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATTGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCTTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTGGACATTCTAATGTGTGATGACTGTCTCAATAACGAACAATTCGCAACCGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTTGATGTGTTCTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTGCGAGGAGACTCGGGCCGAGTTGTTCAAATTTTCACAAACTTGATCAGCAATTCTATCAAATTCACAACCTCTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATAATCTCAACGACGTAGGCAATTTCTGTACCGATCAGAAGAAATCACGATTTCCTAATTGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGGTTATGCATCGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATCATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCTCACATTAGAAGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAACCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATCGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAAAGCCAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTAGCAATTGTAACTCTCAGTGTGCAAAATTTCAAGTCAAAGACAGTCTAGAAGAAACGATAGCAAAACCATGTCAGTCGCCATTTTCGCCCGTTAACCATAGCTTAGTTGAGCTAACTCATGTACATTCGAACGAGAGTAATATGAGGACTGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCGAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAGATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTCGAAAAGATGGGAGCCATGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTAAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACGAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCGATTGTAGCATTGACAGCCCACGCAATGTCATCTGATGAAGCCAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 3597 43.37 MAEEDTLSEISESSSSSSALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRIFHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHTSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLTMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCETSNNLNDVGNFCTDQKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFTQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELSNCNSQCAKFQVKDSLEETIAKPCQSPFSPVNHSLVELTHVHSNESNMRTGDPRDTRQNSSKPQCRSSESSGQNLGCNYPTSQGESHSKNVPSKRSLEGLRILLAEDTPVLQRVTTIMLEKMGAMAIAVGDGLQAVEAITAMLSAEEQRRECPTRYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9453335 9458681 - Cp4.1LG08g13050.1 Cpe08g01314 474280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01314 1198 SMART REC_2 1063 1190 IPR001789 GO:0000160
Cpe08g01314 1198 ProSiteProfiles Histidine kinase domain profile. 513 746 IPR005467 -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 7 23 - -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1 23 - -
Cpe08g01314 1198 PANTHER OSMOSENSOR HISTIDINE KINASE 24 546 - -
Cpe08g01314 1198 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 546 - -
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 543 IPR036097 GO:0000155|GO:0007165
Cpe08g01314 1198 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 542 742 IPR036890 -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1006 1056 - -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1020 1053 - -
Cpe08g01314 1198 CDD REC_hyHK_CKI1_RcsC-like 1065 1190 - -
Cpe08g01314 1198 ProSiteProfiles Response regulatory domain profile. 1064 1194 IPR001789 GO:0000160
Cpe08g01314 1198 CDD HisKA 507 532 IPR003661 GO:0000155|GO:0007165
Cpe08g01314 1198 Pfam His Kinase A (phospho-acceptor) domain 507 542 IPR003661 GO:0000155|GO:0007165
Cpe08g01314 1198 Gene3D - 1042 1195 - -
Cpe08g01314 1198 SMART HKATPase_4 596 746 IPR003594 -
Cpe08g01314 1198 Pfam Response regulator receiver domain 1065 1188 IPR001789 GO:0000160
Cpe08g01314 1198 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 744 IPR003594 -
Cpe08g01314 1198 Gene3D - 548 747 IPR036890 -
Cpe08g01314 1198 PANTHER OSMOSENSOR HISTIDINE KINASE 545 1195 - -
Cpe08g01314 1198 SUPERFAMILY CheY-like 1061 1196 IPR011006 -
Cpe08g01314 1198 PANTHER TWO-COMPONENT HISTIDINE KINASE 545 1195 - -
Cpe08g01314 1198 SMART HisKA_10 506 599 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00860 Cpe-Chr7:7780854 Cpe08g01314 Cpe-Chr8:9453335 1.83E-25 dispersed
Cpe08g01314 Cpe-Chr8:9453335 Cpe16g00390 Cpe-Chr16:5476764 6.21E-15 dispersed
Cpe14g01030 Cpe-Chr14:8659658 Cpe08g01314 Cpe-Chr8:9453335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49933 PF02518 HATPase_c 1.00E-22 CL0025 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01314 - - csv:101217761 2108.57