Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01314 ATGGCAGAAGAGGATACCCTCTCTGAAATTTCTGAATCTTCTTCGTCTTCTTCAGCTCTCACCTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTTTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGACGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATACAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACTGAATCGCATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGCAATATGTCTGCAAAATGGTATAGGGAACCTCTTGATCCCATTAGTGGCCAGAAGATAGGGAAAGCGAAGCAAATCCCTCCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCTGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTTACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGTGGTCCAAAGCTCACGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATTGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCTTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTGGACATTCTAATGTGTGATGACTGTCTCAATAACGAACAATTCGCAACCGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTTGATGTGTTCTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTGCGAGGAGACTCGGGCCGAGTTGTTCAAATTTTCACAAACTTGATCAGCAATTCTATCAAATTCACAACCTCTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATAATCTCAACGACGTAGGCAATTTCTGTACCGATCAGAAGAAATCACGATTTCCTAATTGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGGTTATGCATCGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATCATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCTCACATTAGAAGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAACCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATCGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAAAGCCAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTAGCAATTGTAACTCTCAGTGTGCAAAATTTCAAGTCAAAGACAGTCTAGAAGAAACGATAGCAAAACCATGTCAGTCGCCATTTTCGCCCGTTAACCATAGCTTAGTTGAGCTAACTCATGTACATTCGAACGAGAGTAATATGAGGACTGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCGAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAGATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTCGAAAAGATGGGAGCCATGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTAAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACGAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCGATTGTAGCATTGACAGCCCACGCAATGTCATCTGATGAAGCCAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 3597 43.37 MAEEDTLSEISESSSSSSALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRIFHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHTSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLTMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCETSNNLNDVGNFCTDQKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFTQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELSNCNSQCAKFQVKDSLEETIAKPCQSPFSPVNHSLVELTHVHSNESNMRTGDPRDTRQNSSKPQCRSSESSGQNLGCNYPTSQGESHSKNVPSKRSLEGLRILLAEDTPVLQRVTTIMLEKMGAMAIAVGDGLQAVEAITAMLSAEEQRRECPTRYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9453335 9458681 - Cp4.1LG08g13050.1 Cpe08g01314 474280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01314 1198 SMART REC_2 1063 1190 IPR001789 GO:0000160
Cpe08g01314 1198 ProSiteProfiles Histidine kinase domain profile. 513 746 IPR005467 -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 7 23 - -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1 23 - -
Cpe08g01314 1198 PANTHER OSMOSENSOR HISTIDINE KINASE 24 546 - -
Cpe08g01314 1198 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 546 - -
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Cpe08g01314 1198 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 543 IPR036097 GO:0000155|GO:0007165
Cpe08g01314 1198 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 542 742 IPR036890 -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1006 1056 - -
Cpe08g01314 1198 MobiDBLite consensus disorder prediction 1020 1053 - -
Cpe08g01314 1198 CDD REC_hyHK_CKI1_RcsC-like 1065 1190 - -
Cpe08g01314 1198 ProSiteProfiles Response regulatory domain profile. 1064 1194 IPR001789 GO:0000160
Cpe08g01314 1198 CDD HisKA 507 532 IPR003661 GO:0000155|GO:0007165
Cpe08g01314 1198 Pfam His Kinase A (phospho-acceptor) domain 507 542 IPR003661 GO:0000155|GO:0007165
Cpe08g01314 1198 Gene3D - 1042 1195 - -
Cpe08g01314 1198 SMART HKATPase_4 596 746 IPR003594 -
Cpe08g01314 1198 Pfam Response regulator receiver domain 1065 1188 IPR001789 GO:0000160
Cpe08g01314 1198 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 744 IPR003594 -
Cpe08g01314 1198 Gene3D - 548 747 IPR036890 -
Cpe08g01314 1198 PANTHER OSMOSENSOR HISTIDINE KINASE 545 1195 - -
Cpe08g01314 1198 SUPERFAMILY CheY-like 1061 1196 IPR011006 -
Cpe08g01314 1198 PANTHER TWO-COMPONENT HISTIDINE KINASE 545 1195 - -
Cpe08g01314 1198 SMART HisKA_10 506 599 IPR003661 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01314 - - - csv:101217761 2108.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00860 Cpe-Chr7:7780854 Cpe08g01314 Cpe-Chr8:9453335 1.83E-25 dispersed
Cpe08g01314 Cpe-Chr8:9453335 Cpe16g00390 Cpe-Chr16:5476764 6.21E-15 dispersed
Cpe14g01030 Cpe-Chr14:8659658 Cpe08g01314 Cpe-Chr8:9453335 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49933 PF02518 HATPase_c 1.00E-22 CL0025 Cpe TR