Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01328 ATGTCTTTTTCAGCTGTCTCAAGTCTTCCCCCAGGAGGACCCACTTCAGGGCCCTCTTCAGATGCATTGTATAGGGAATTATGGCATGCCTGTGCTGGACCGCTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTGTATGCTCAGATAACTCTGTTACCGGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGCCTTCCACCTCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCGAGTGACTTACATGGGAATCAAACAAGCAGGTCTACATTTCTTGTGAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGCGAGGAGGTTCCTGAAAGAAGTTTTAGTGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGATGGGCTAATTCTGACTGGCGATCTCTAAAGGTGCAATGGGATGAGCCTTCATCTATTCTGCGTCCAGATAGGGTGTCTTCCTGGGAATTGGAGCCACTTGTTGCATCTAGCCCTCTAAGCTCTCTGCCTGCACAGAGGAACAAGCGTCCACGACCAGCTGTTTTGCCTTCCCCTTCCGCAGATGCAGCTGTACTCGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCATATACCGAGCCGCAGCGGGGAAGGGACCTATATTCTTCACCAAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGGGAATAATTCTCTTGGCGCTGTGTCCAGCAACGCCTACTGGTCTAATACCAGTATGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCAAAAAGAGAACCCGTTGAAAAGAAACAGAACACTAGGAACGGATGCAGGCTCTTTGGGTTCCAGCTTCTTGGAAACTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCAAAAATGGTGGGCGAGGATAGGCCAGTTCCACCTATAGATACAGCATTTGACCAGCATTTTGACCCATCGAACATTCACCGATCAGATATGCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTCTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCAAATGCAAGGAATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCGGTAAAGAAATGGAAGGTTGTTTACACCGATGATGAAGATGATATGATGATGATATTCATCTACACGACAGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCACTCAGTGGAGAGATGAAGCTCAGCAAGCCAGATTCTGATATGGTTGCCAACCATACGGAGGATCAATCGTTCAGTTCAGTTCGGTTATTTTTCGGGGCTTTTCTGTCCCCTGATTATAAAACCGTGCAAGTCAGGAGTCTCTTTTTGTATGGGTTGTCAATGACAATTAGGGAGGAAGAAGCCCAAACATCTTCCACCCTTCTA 1821 46.13 MSFSAVSSLPPGGPTSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVASDLHGNQTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSSWELEPLVASSPLSSLPAQRNKRPRPAVLPSPSADAAVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNGNNSLGAVSSNAYWSNTSMVENVMDTSSHGAKREPVEKKQNTRNGCRLFGFQLLGNSNVEEASPVSTPKMVGEDRPVPPIDTAFDQHFDPSNIHRSDMPSVSCDADKSCLISPLESQSRQIRSCTKVQMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWKVVYTDDEDDMMMIFIYTTEEVKRLSPKIKLPLSGEMKLSKPDSDMVANHTEDQSFSSVRLFFGAFLSPDYKTVQVRSLFLYGLSMTIREEEAQTSSTLL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9539692 9547817 - Cp4.1LG08g13310.1 Cpe08g01328 474294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01328 607 SUPERFAMILY DNA-binding pseudobarrel domain 117 178 IPR015300 -
Cpe08g01328 607 PANTHER AUXIN RESPONSE FACTOR 9 9 176 - -
Cpe08g01328 607 PANTHER AUXIN RESPONSE FACTOR 9 177 545 - -
Cpe08g01328 607 Gene3D - 201 270 - -
Cpe08g01328 607 Gene3D - 125 200 IPR015300 -
Cpe08g01328 607 MobiDBLite consensus disorder prediction 271 294 - -
Cpe08g01328 607 Pfam AUX/IAA family 457 495 IPR033389 -
Cpe08g01328 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 176 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe08g01328 607 Gene3D - 454 536 - -
Cpe08g01328 607 ProSiteProfiles PB1 domain profile. 459 551 IPR000270 GO:0005515
Cpe08g01328 607 Pfam Auxin response factor 177 242 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe08g01328 607 SUPERFAMILY CAD & PB1 domains 461 521 - -
Cpe08g01328 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 177 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01717 Cpe-Chr1:11549242 Cpe08g01328 Cpe-Chr8:9539692 0 dispersed
Cpe08g01328 Cpe-Chr8:9539692 Cpe18g00939 Cpe-Chr18:8268551 8.79E-24 dispersed
Cpe08g01328 Cpe-Chr8:9539692 Cpe13g00097 Cpe-Chr13:707914 3.68E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01328 K14486 - csv:101204612 675.626