Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01331 ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATTATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGCGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCGTTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACTTGATAATGCCGTACAACATGCTTGGCGGGGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACTGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGTGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA 840 53.1 MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHLIMPYNMLGGGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKVGWKIQKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSPSHSPTPLD 279
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 9566459 9567298 + Cp4.1LG08g13270.1 Cpe08g01331 474297
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01331 279 Gene3D - 188 263 - -
Cpe08g01331 279 MobiDBLite consensus disorder prediction 260 279 - -
Cpe08g01331 279 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Cpe08g01331 279 SUPERFAMILY Homeodomain-like 195 261 IPR009057 -
Cpe08g01331 279 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Cpe08g01331 279 MobiDBLite consensus disorder prediction 1 23 - -
Cpe08g01331 279 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 264 - -
Cpe08g01331 279 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 49 264 - -
Cpe08g01331 279 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Cpe08g01331 279 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 202 258 IPR006455 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01712 Cpe-Chr1:11426926 Cpe08g01331 Cpe-Chr8:9566459 2.16E-137 dispersed
Cpe08g01331 Cpe-Chr8:9566459 Cpe10g00542 Cpe-Chr10:3189658 9.35E-59 dispersed
Cpe08g01331 Cpe-Chr8:9566459 Cpe07g00420 Cpe-Chr7:2710667 4.40E-60 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49934 PF04770 ZF-HD_dimer 2.60E-29 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01331 - - bhj:120068944 406.371