Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01331 | ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATTATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGCGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCGTTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACTTGATAATGCCGTACAACATGCTTGGCGGGGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACTGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGTGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA | 840 | 53.1 | MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHLIMPYNMLGGGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKVGWKIQKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSPSHSPTPLD | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 9566459 | 9567298 | + | Cp4.1LG08g13270.1 | Cpe08g01331 | 474297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01331 | 279 | Gene3D | - | 188 | 263 | - | - | |
| Cpe08g01331 | 279 | MobiDBLite | consensus disorder prediction | 260 | 279 | - | - | |
| Cpe08g01331 | 279 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 72 | 121 | IPR006456 | - | |
| Cpe08g01331 | 279 | SUPERFAMILY | Homeodomain-like | 195 | 261 | IPR009057 | - | |
| Cpe08g01331 | 279 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 71 | 122 | IPR006456 | - | |
| Cpe08g01331 | 279 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cpe08g01331 | 279 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 49 | 264 | - | - | |
| Cpe08g01331 | 279 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 49 | 264 | - | - | |
| Cpe08g01331 | 279 | Pfam | ZF-HD protein dimerisation region | 70 | 122 | IPR006456 | - | |
| Cpe08g01331 | 279 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 202 | 258 | IPR006455 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01712 | Cpe-Chr1:11426926 | Cpe08g01331 | Cpe-Chr8:9566459 | 2.16E-137 | dispersed | |
| Cpe08g01331 | Cpe-Chr8:9566459 | Cpe10g00542 | Cpe-Chr10:3189658 | 9.35E-59 | dispersed | |
| Cpe08g01331 | Cpe-Chr8:9566459 | Cpe07g00420 | Cpe-Chr7:2710667 | 4.40E-60 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49934 | PF04770 | ZF-HD_dimer | 2.60E-29 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01331 | - | - | bhj:120068944 | 406.371 |