Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01339 ATGGGGTTGCAAATTGCGGATCCGAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCCACCTTCCGCATTTTCGCTCCTCTCCCCAATTGCCCGAGGGGCGGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAGAGTTGCTATAAAGAAGCCCATCTTGTCTACTTCCGACGACTTGGACAAGTTTCATAGGGAGCTTCAGATACTATGCGAATTAGATCATCCAGGCATAGTCAAACTGATCGCAGTCAATGCGAGGCCACCGAACTACTTGTTTTTCTTCGAATTCTATGAGTTTCCGAATCTTGCGGAGAAATTGCATGCTGAAGAATGGAATCCGAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTGCATAGGGATGTGAAACCAGCAAACGTTCTTCTTGGCAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCAGAAACATCTGAAAGGAATCTCCGCAGAAAACTGGAAGTCATCTGGGAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTACAGTTTTGGCATCTTGATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACGGAGCAGCTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGTCCTGCTCTTCCTAATGATGAGTCTGGCGCACCATCAAGGTTGTTGTCACTTATACGCAGGTGCTGGGATGAAAATCCAGAAAATAGACCATCTTTTTCTGATATAGTTGTGGACCTAGAGTCAATTTGGGAGGACAGAAAGGGTTTAGAATCTGTCACCCCTATGCATCCCAATTTGTGTGGTAGTGTTGTTAGTGATGCTAGTGAAAATGATTATGCATATCAAGAAGATATTAATTGGTCAAATCAGGGTGAACAGTTTTCTAGAAAGGCTTCTAATGCAGATGGGTGTGCTGTGAATGTTTGGCTTGATTCCTCATCTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTCTTGCCTAACATGTGTAACAAAGAAGACATCCATGCTTTTGGAATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAACGTCATGTTCCACAAGAAGTCCTGTGGATGCATTAAAGGAAGCATTTGTGAAAACAGATGTTGAGTTTAGAAAAGAACTCGATTTTTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTTCTGCTGTTGCTCTAATTGTTAGAGACAGGCTTTTTATTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGTTATCCCGTCGTTTTAAGTAAGGATCATGTCGCTAGTTGTGTCGAGGAGCGAGAGCGTGTCATCAGGGCTGGAGGGCAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGGTCTTCAGGTGACTCGTTCAATTGGCGACGATGATCTGAAGCCGGCTGTGAGTGCAGAACCTGAGATAACAGAAACTGTTCTGACTTCACAGGATGATTACCTGGTTATGGGGAGTGATGGACTATGGGATGCCCTGAGCAACTCTGAGGTGGTGGGTATCATCAGGGACACAGTGAAAGAAGCGGCAATGTGTTCAAAGCGGCTTGCAACAGAAGCAGTAGCCAGGGGGAGCAAGGATAACATTACGGTAATTGTTGTATTTTTACATCCAGTATGTACGGTAGAGAGAATTTATTAA 1971 44.6 MGLQIADPNTCIRGCCSSKSIPLHLPPSAFSLLSPIARGAESTVYEGRLDGKRVAIKKPILSTSDDLDKFHRELQILCELDHPGIVKLIAVNARPPNYLFFFEFYEFPNLAEKLHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLGKDLRPYLADFGLAVHQKHLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPNDESGAPSRLLSLIRRCWDENPENRPSFSDIVVDLESIWEDRKGLESVTPMHPNLCGSVVSDASENDYAYQEDINWSNQGEQFSRKASNADGCAVNVWLDSSSDHLAYRPILSWGSFSTCGRRETMEDSHFLLPNMCNKEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQTSCSTRSPVDALKEAFVKTDVEFRKELDFFRKSKKVKQKDWHPGCTSAVALIVRDRLFIANAGDCRTILCRAGYPVVLSKDHVASCVEERERVIRAGGQVKWQVDTWRVGPAGLQVTRSIGDDDLKPAVSAEPEITETVLTSQDDYLVMGSDGLWDALSNSEVVGIIRDTVKEAAMCSKRLATEAVARGSKDNITVIVVFLHPVCTVERIY 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9653010 9657306 + Cp4.1LG08g13360.1 Cpe08g01339 474305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01339 656 SUPERFAMILY PP2C-like 383 648 IPR036457 -
Cpe08g01339 656 SMART PP2C_4 379 644 IPR001932 -
Cpe08g01339 656 PANTHER - 1 656 - -
Cpe08g01339 656 SUPERFAMILY Protein kinase-like (PK-like) 23 340 IPR011009 -
Cpe08g01339 656 Pfam Protein phosphatase 2C 393 639 IPR001932 -
Cpe08g01339 656 Gene3D - 379 649 IPR036457 -
Cpe08g01339 656 SMART PP2C_SIG_2 404 646 IPR001932 -
Cpe08g01339 656 ProSiteProfiles Protein kinase domain profile. 30 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01339 656 ProSiteProfiles PPM-type phosphatase domain profile. 389 646 IPR001932 -
Cpe08g01339 656 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01339 656 PANTHER PROTEIN PHOSPHATASE 2C 1 656 IPR015655 GO:0004722|GO:0006470
Cpe08g01339 656 CDD PP2Cc 391 646 IPR001932 -
Cpe08g01339 656 Pfam Protein kinase domain 33 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01339 656 Gene3D Transferase(Phosphotransferase) domain 1 18 330 - -
Cpe08g01339 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00255 Cpe-Chr6:1364022 Cpe08g01339 Cpe-Chr8:9653010 9.03E-21 dispersed
Cpe08g01339 Cpe-Chr8:9653010 Cpe06g00276 Cpe-Chr6:1521860 2.47E-44 dispersed
Cpe08g01339 Cpe-Chr8:9653010 Cpe02g00310 Cpe-Chr2:1640017 2.58E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62578 PF00069 Pkinase 4.50E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01339 - - cmos:111440856 1283.47