Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01342 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAACCAATGCCGTGAGCGGGATGCCTAGCTTCGTTTCTTCAATGCCCACACCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCGAATAGTTCGGCTCTGAACCACCCACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGCTGCCATTACAGAAAGAACCAAATCCGAATTTGGTCTCTACATCTAGCGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCCTCGACAGACGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTTATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAATAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCGGAAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACATCGGGGTCATCTGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 1377 46.19 MGSRTVKIGADDITNAVSGMPSFVSSMPTPNNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNHPLVSTDVNLPTAIMGSQTLPLQKEPNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9665720 9671335 - Cp4.1LG08g13430.1 Cpe08g01342 474308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01342 458 SMART brlzneu 169 232 IPR004827 GO:0003700|GO:0006355
Cpe08g01342 458 MobiDBLite consensus disorder prediction 100 134 - -
Cpe08g01342 458 CDD bZIP_HBP1b-like 173 225 - -
Cpe08g01342 458 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 176 191 IPR004827 GO:0003700|GO:0006355
Cpe08g01342 458 Gene3D - 172 224 - -
Cpe08g01342 458 SUPERFAMILY Leucine zipper domain 173 216 IPR046347 GO:0003700|GO:0006355
Cpe08g01342 458 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 215 IPR004827 GO:0003700|GO:0006355
Cpe08g01342 458 MobiDBLite consensus disorder prediction 100 174 - -
Cpe08g01342 458 Pfam Seed dormancy control 256 331 IPR025422 GO:0006351|GO:0043565
Cpe08g01342 458 ProSiteProfiles DOG1 domain profile. 238 455 IPR025422 GO:0006351|GO:0043565
Cpe08g01342 458 PANTHER TRANSCRIPTION FACTOR TGA9 76 458 - -
Cpe08g01342 458 Pfam bZIP transcription factor 172 213 IPR004827 GO:0003700|GO:0006355
Cpe08g01342 458 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 76 458 - -
Cpe08g01342 458 MobiDBLite consensus disorder prediction 135 150 - -
Cpe08g01342 458 Coils Coil 192 219 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00385 Cpe08g01342 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00106 Cpe-Chr7:547250 Cpe08g01342 Cpe-Chr8:9665720 0 dispersed
Cpe08g01342 Cpe-Chr8:9665720 Cpe13g00411 Cpe-Chr13:4453535 1.04E-146 dispersed
Cpe08g01336 Cpe-Chr8:9633425 Cpe08g01342 Cpe-Chr8:9665720 1.98E-47 proximal
Cpe09g00623 Cpe-Chr9:4553663 Cpe08g01342 Cpe-Chr8:9665720 1.52E-116 transposed
Cpe16g00804 Cpe-Chr16:7840910 Cpe08g01342 Cpe-Chr8:9665720 1.46E-99 transposed
Cpe03g00448 Cpe-Chr3:2531607 Cpe08g01342 Cpe-Chr8:9665720 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49935 PF14144 DOG1 7.90E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01342 K14431 - csv:101219149 783.867