Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g01342 | ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAACCAATGCCGTGAGCGGGATGCCTAGCTTCGTTTCTTCAATGCCCACACCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCGAATAGTTCGGCTCTGAACCACCCACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGCTGCCATTACAGAAAGAACCAAATCCGAATTTGGTCTCTACATCTAGCGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCCTCGACAGACGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTTATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAATAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCGGAAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACATCGGGGTCATCTGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA | 1377 | 46.19 | MGSRTVKIGADDITNAVSGMPSFVSSMPTPNNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNHPLVSTDVNLPTAIMGSQTLPLQKEPNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9665720 | 9671335 | - | Cp4.1LG08g13430.1 | Cpe08g01342 | 474308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g01342 | 458 | SMART | brlzneu | 169 | 232 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe08g01342 | 458 | MobiDBLite | consensus disorder prediction | 100 | 134 | - | - | |
Cpe08g01342 | 458 | CDD | bZIP_HBP1b-like | 173 | 225 | - | - | |
Cpe08g01342 | 458 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 176 | 191 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe08g01342 | 458 | Gene3D | - | 172 | 224 | - | - | |
Cpe08g01342 | 458 | SUPERFAMILY | Leucine zipper domain | 173 | 216 | IPR046347 | GO:0003700|GO:0006355 | |
Cpe08g01342 | 458 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 171 | 215 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe08g01342 | 458 | MobiDBLite | consensus disorder prediction | 100 | 174 | - | - | |
Cpe08g01342 | 458 | Pfam | Seed dormancy control | 256 | 331 | IPR025422 | GO:0006351|GO:0043565 | |
Cpe08g01342 | 458 | ProSiteProfiles | DOG1 domain profile. | 238 | 455 | IPR025422 | GO:0006351|GO:0043565 | |
Cpe08g01342 | 458 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 76 | 458 | - | - | |
Cpe08g01342 | 458 | Pfam | bZIP transcription factor | 172 | 213 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe08g01342 | 458 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 76 | 458 | - | - | |
Cpe08g01342 | 458 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
Cpe08g01342 | 458 | Coils | Coil | 192 | 219 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00385 | Cpe08g01342 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00106 | Cpe-Chr7:547250 | Cpe08g01342 | Cpe-Chr8:9665720 | 0 | dispersed | |
Cpe08g01342 | Cpe-Chr8:9665720 | Cpe13g00411 | Cpe-Chr13:4453535 | 1.04E-146 | dispersed | |
Cpe08g01336 | Cpe-Chr8:9633425 | Cpe08g01342 | Cpe-Chr8:9665720 | 1.98E-47 | proximal | |
Cpe09g00623 | Cpe-Chr9:4553663 | Cpe08g01342 | Cpe-Chr8:9665720 | 1.52E-116 | transposed | |
Cpe16g00804 | Cpe-Chr16:7840910 | Cpe08g01342 | Cpe-Chr8:9665720 | 1.46E-99 | transposed | |
Cpe03g00448 | Cpe-Chr3:2531607 | Cpe08g01342 | Cpe-Chr8:9665720 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49935 | PF14144 | DOG1 | 7.90E-30 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g01342 | K14431 | - | csv:101219149 | 783.867 |