Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01347 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACAACAACCACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTATGTGTCTGGCGCCGGCGATGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCGCCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCTCCGCCGAATGGGCAGTTTGAGCATCCGTTTTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA 867 53.98 MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNNNHHHPPPPPPPVPIQPSSADFGDSGDYVSGAGDGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9711536 9712402 + Cp4.1LG08g13460.1 Cpe08g01347 474313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01347 288 MobiDBLite consensus disorder prediction 1 24 - -
Cpe08g01347 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Cpe08g01347 288 Gene3D - 92 154 - -
Cpe08g01347 288 MobiDBLite consensus disorder prediction 256 288 - -
Cpe08g01347 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Cpe08g01347 288 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 288 IPR044841 GO:0003700|GO:0006355
Cpe08g01347 288 MobiDBLite consensus disorder prediction 41 94 - -
Cpe08g01347 288 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Cpe08g01347 288 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 288 - -
Cpe08g01347 288 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
Cpe08g01347 288 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01347 Cpe-Chr8:9711536 Cpe10g01100 Cpe-Chr10:7054606 1.07E-121 dispersed
Cpe19g00248 Cpe-Chr19:2031934 Cpe08g01347 Cpe-Chr8:9711536 8.10E-120 transposed
Cpe03g00415 Cpe-Chr3:2320052 Cpe08g01347 Cpe-Chr8:9711536 4.28E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49936 PF00249 Myb_DNA-binding 1.60E-07 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01347 - - csv:101216059 434.876