Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01347 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACAACAACCACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTATGTGTCTGGCGCCGGCGATGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCGCCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCTCCGCCGAATGGGCAGTTTGAGCATCCGTTTTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA 867 53.98 MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNNNHHHPPPPPPPVPIQPSSADFGDSGDYVSGAGDGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9711536 9712402 + Cp4.1LG08g13460.1 Cpe08g01347 474313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01347 288 MobiDBLite consensus disorder prediction 1 24 - -
Cpe08g01347 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Cpe08g01347 288 Gene3D - 92 154 - -
Cpe08g01347 288 MobiDBLite consensus disorder prediction 256 288 - -
Cpe08g01347 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Cpe08g01347 288 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 288 IPR044841 GO:0003700|GO:0006355
Cpe08g01347 288 MobiDBLite consensus disorder prediction 41 94 - -
Cpe08g01347 288 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Cpe08g01347 288 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 288 - -
Cpe08g01347 288 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
Cpe08g01347 288 MobiDBLite consensus disorder prediction 54 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01347 - - - csv:101216059 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01347 Cpe-Chr8:9711536 Cpe10g01100 Cpe-Chr10:7054606 1.07E-121 dispersed
Cpe19g00248 Cpe-Chr19:2031934 Cpe08g01347 Cpe-Chr8:9711536 8.10E-120 transposed
Cpe03g00415 Cpe-Chr3:2320052 Cpe08g01347 Cpe-Chr8:9711536 4.28E-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49936 PF00249 Myb_DNA-binding 1.60E-07 CL0123 Cpe TF