Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01381 ATGGAAAGCGGTGAGGAATTAGAGAAGATGGTTGGGATGATTATCTGGCATTCTCCTGATGAAGGAAGCATGTTCTGTGGTTTAGAGCTGAAGTCCATATCGTCTTCAAGAAATTTCTTCTGTTCTTTTGACTGTTCCATGGGCTCAGTCATGAATAACTTGACTGTCGAAACAGATGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGTCGATTGAGAGGCTCAAAGCAGATGATTAATGAGCAGAGAACACCTTTAATGGTTGCTGCTACTTATGGAAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTTGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCTGCTCTTAGCTGCTGGTGCTGATTCTAGTATGGTTGATGGGAATGGACATCGACCCGTTGATGTGATTGTTGCCCCCCCAAGGCATGCAGAGTTCAAATCTATCCTTACAGAGCTTCTTAGAACATATGGTTCGTCTGGTGAAGGAAATCTTGATGTTTTAAAAGGTGCAAGGAATTTGCTTTCTCCTCGCCCTGCATCTCCTCTGAATGCCCCCTCGTCTGCATCAGAGTTGGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCTATGTTTTCTCCATCTGAGAAGAAAGAATACCCTGTTGATATTTCTCTTCCGGACATCAAGAACAGTATTTACTCAACTGATGAATTTCGAATGTATTCGTTCAAGGTTCGTCCCTGTTCACGGGCTTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAGAATGCCAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCCGATTTTCGGAAGGGTGCTTGCAGATGGGGAGATATGTGTGAATATGCTCACGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGGACCCGACTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACAGGACTGAGGAACTTCGACCACTGTATGTTTCGACTGGCTCTGCAACTTCTGGGGCTTCTGCTATGGAATATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTATGATATCTCCATCACCGTTCACTCCTCCAATGTCTCCCTCTGCCAATGGCATGTCTCACTCATCCATGGCGTGGTCTCAACCGAATGTACCTGTCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATCCCTGCGGAGGACTTCGATTATCTGAGCGATTTTGATATGCAACAACAGCAGCTCGTTAATGACTTGAACTGTCTTTCTCAGCCACCATTAAGTTCAAACTCATTGAGCCGTTCTGGTCGGCTGAAGCTTCTGACTCCTTCGAATCTTGACGATCTCTTCTCTGCTGAAAGTTTATCTCCCAGATACTCCGATCAAGCTTTAGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAAAATATTTTGTCACCAATCAACACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCTTCCTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCGATCTCTCCCATGGGCTCTCGCTTGTCCATGTTAGCTCATAGAGAGAAACAGCCACCGTTTGGCAGCCTCAGCTCGCGTGAACTAGGTGCCAATTCTGCTTCTGTTGTTGGTTCCCCTACAAGTTCTTGGTCTAAATGGGGACCTTCTAATAGAAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTAAGCAATCATCGTCGTTTGAGCTTGGGAACAATGGAGAAGAACCAGATTTATCATGGGTTCAATCGCTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCAGGTGGCAATAATTTTGTATCTGAAGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGACCATGCTGCATTGGGAGCATGGCTCGAGCAAATGCAGCTCGATCATCTCGTCGCACAACAAAACTGA 2241 45.47 MESGEELEKMVGMIIWHSPDEGSMFCGLELKSISSSRNFFCSFDCSMGSVMNNLTVETDDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMINEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKLLLAAGADSSMVDGNGHRPVDVIVAPPRHAEFKSILTELLRTYGSSGEGNLDVLKGARNLLSPRPASPLNAPSSASELVSSPTKSKLNDFPMFSPSEKKEYPVDISLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRWGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHRTEELRPLYVSTGSATSGASAMEYNTVMNLLPGSPSSVPMISPSPFTPPMSPSANGMSHSSMAWSQPNVPVLHLPGSNIQSSRLRSSLSARDIPAEDFDYLSDFDMQQQQLVNDLNCLSQPPLSSNSLSRSGRLKLLTPSNLDDLFSAESLSPRYSDQALASAVFSPTHKSAVINQFQQQQNILSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAHREKQPPFGSLSSRELGANSASVVGSPTSSWSKWGPSNRRPDWAVNADEMGKLKQSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSGGNNFVSEGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9920910 9924129 + Cp4.1LG08g13850.1 Cpe08g01381 474347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01381 746 SMART c3hfinal6 322 348 IPR000571 GO:0046872
Cpe08g01381 746 SMART c3hfinal6 357 380 IPR000571 GO:0046872
Cpe08g01381 746 Gene3D - 323 385 - -
Cpe08g01381 746 ProSiteProfiles Ankyrin repeat region circular profile. 142 176 - -
Cpe08g01381 746 MobiDBLite consensus disorder prediction 697 721 - -
Cpe08g01381 746 MobiDBLite consensus disorder prediction 227 246 - -
Cpe08g01381 746 MobiDBLite consensus disorder prediction 622 646 - -
Cpe08g01381 746 ProSiteProfiles Ankyrin repeat profile. 142 177 IPR002110 GO:0005515
Cpe08g01381 746 ProSiteProfiles Zinc finger C3H1-type profile. 327 349 IPR000571 GO:0046872
Cpe08g01381 746 SUPERFAMILY Ankyrin repeat 59 187 IPR036770 -
Cpe08g01381 746 Pfam Ankyrin repeats (3 copies) 107 173 IPR002110 GO:0005515
Cpe08g01381 746 MobiDBLite consensus disorder prediction 229 246 - -
Cpe08g01381 746 Gene3D - 58 207 IPR036770 -
Cpe08g01381 746 MobiDBLite consensus disorder prediction 613 653 - -
Cpe08g01381 746 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 51 743 - -
Cpe08g01381 746 MobiDBLite consensus disorder prediction 690 721 - -
Cpe08g01381 746 Pfam CCCH-type zinc finger 327 347 IPR041367 -
Cpe08g01381 746 PANTHER UNKEMPT FAMILY MEMBER 51 743 IPR045234 -
Cpe08g01381 746 SMART ANK_2a 107 137 IPR002110 GO:0005515
Cpe08g01381 746 SMART ANK_2a 142 174 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00399 Cpe08g01381 CCT
Cpe03g00399 Cpe08g01381 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00128 Cpe-Chr1:738386 Cpe08g01381 Cpe-Chr8:9920910 7.54E-153 dispersed
Cpe01g01032 Cpe-Chr1:6109429 Cpe08g01381 Cpe-Chr8:9920910 5.85E-157 dispersed
Cpe02g01577 Cpe-Chr2:13312215 Cpe08g01381 Cpe-Chr8:9920910 0 dispersed
Cpe03g00864 Cpe-Chr3:5448764 Cpe08g01381 Cpe-Chr8:9920910 0 dispersed
Cpe05g00970 Cpe-Chr5:6326093 Cpe08g01381 Cpe-Chr8:9920910 1.62E-109 dispersed
Cpe08g01381 Cpe-Chr8:9920910 Cpe18g00382 Cpe-Chr18:5117200 2.43E-56 dispersed
Cpe03g00399 Cpe-Chr3:2174527 Cpe08g01381 Cpe-Chr8:9920910 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49941 PF12796 Ank_2 1.10E-08 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01381 - - csv:101207646 1177.54