Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01384 ATGGATGATCCTTCCACTAATTTCTTCACAGATCTCTTCAAATTCAACTATCCCACTAATTTCCACCACCACCACAACCCTCCTTCTTCAAATCCTCCTCCCAATTTCTTCCACGCGCCGCCGTCTTCTCCTCCACTCCGGCAGGCCCTCCCCCTTCTCCGCCTCAGCCCCACAAGGTCATCTCAAGACCACCACCTCTCTTTTACTTCCTCCTCCGCCATGGAAATTGACAACAACAACAACCACAACAACGATAACGAGGATGTTTCGGTGACGGTTGCACTTCACATAGGGCTTCCAAGCTCTAATGCCTCAGAAATGGCGACCCTTTTGGTGTCTGATAATAATAATCAAAATGAGGAAGAAGATCAATTGGAAGAAGAATTAGAAGAAGAAGAAGATGAAGATGAAGAACAGCAACAAGCGGGTATCACAATTTCTGGATTCTCTTTGAGTAGCAGACTCAATAAAGGACAGTATTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTTTCTTGTCCTGTTTGTTTCAAAACCTTCAATCGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGGCGAGGCCCGGAGTCCTTGAGAGGCACACAGCCAACGGGGATGCTCAGGCTGCCGTGCTACTGCTGCTCGCCGGGCTGCCGCAACAACATCGACCATCCGAGAGCGAAGCCATTGAAGGACTTCCGAACGCTTCAAACGCATTACAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGTAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCATAAGAGATCGCTTAAAGATCATATCAAAGCCTTTGGAAATGGGCATGCTGCTTATAATAGTAATATTAATAACAACTGTGATCATCGTCAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATGCGTTCGATGAGGAGGACGAGTCGGCTTATTCTGAAGTCGAGGAAGATCATGATTGA 1077 45.4 MDDPSTNFFTDLFKFNYPTNFHHHHNPPSSNPPPNFFHAPPSSPPLRQALPLLRLSPTRSSQDHHLSFTSSSAMEIDNNNNHNNDNEDVSVTVALHIGLPSSNASEMATLLVSDNNNQNEEEDQLEEELEEEEDEDEEQQQAGITISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNSNINNNCDHRQQQHHHHHHHHHHHHHAFDEEDESAYSEVEEDHD 358
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 9954659 9956500 - Cp4.1LG08g13880.1 Cpe08g01384 474350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01384 358 Coils Coil 108 142 - -
Cpe08g01384 358 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Cpe08g01384 358 PANTHER ZINC FINGER PROTEIN WIP2 22 317 IPR043584 GO:0003700|GO:0010468
Cpe08g01384 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 279 IPR013087 -
Cpe08g01384 358 MobiDBLite consensus disorder prediction 27 47 - -
Cpe08g01384 358 Gene3D Classic Zinc Finger 218 305 - -
Cpe08g01384 358 SMART c2h2final6 259 279 IPR013087 -
Cpe08g01384 358 SMART c2h2final6 175 197 IPR013087 -
Cpe08g01384 358 MobiDBLite consensus disorder prediction 119 140 - -
Cpe08g01384 358 MobiDBLite consensus disorder prediction 117 147 - -
Cpe08g01384 358 Gene3D Classic Zinc Finger 174 197 - -
Cpe08g01384 358 SUPERFAMILY beta-beta-alpha zinc fingers 241 279 IPR036236 -
Cpe08g01384 358 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 22 317 - -
Cpe08g01384 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Cpe08g01384 358 MobiDBLite consensus disorder prediction 24 47 - -
Cpe08g01384 358 MobiDBLite consensus disorder prediction 317 358 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe03g00391 Cpe08g01384 CCT
Cpe03g00391 Cpe08g01384 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01384 Cpe-Chr8:9954659 Cpe10g01159 Cpe-Chr10:8500987 8.00E-132 dispersed
Cpe03g00391 Cpe-Chr3:2114959 Cpe08g01384 Cpe-Chr8:9954659 1.01E-175 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49944 None None None None Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01384 - - csv:101208110 436.417