Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g01384 | ATGGATGATCCTTCCACTAATTTCTTCACAGATCTCTTCAAATTCAACTATCCCACTAATTTCCACCACCACCACAACCCTCCTTCTTCAAATCCTCCTCCCAATTTCTTCCACGCGCCGCCGTCTTCTCCTCCACTCCGGCAGGCCCTCCCCCTTCTCCGCCTCAGCCCCACAAGGTCATCTCAAGACCACCACCTCTCTTTTACTTCCTCCTCCGCCATGGAAATTGACAACAACAACAACCACAACAACGATAACGAGGATGTTTCGGTGACGGTTGCACTTCACATAGGGCTTCCAAGCTCTAATGCCTCAGAAATGGCGACCCTTTTGGTGTCTGATAATAATAATCAAAATGAGGAAGAAGATCAATTGGAAGAAGAATTAGAAGAAGAAGAAGATGAAGATGAAGAACAGCAACAAGCGGGTATCACAATTTCTGGATTCTCTTTGAGTAGCAGACTCAATAAAGGACAGTATTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTTTCTTGTCCTGTTTGTTTCAAAACCTTCAATCGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGGCGAGGCCCGGAGTCCTTGAGAGGCACACAGCCAACGGGGATGCTCAGGCTGCCGTGCTACTGCTGCTCGCCGGGCTGCCGCAACAACATCGACCATCCGAGAGCGAAGCCATTGAAGGACTTCCGAACGCTTCAAACGCATTACAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGTAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCATAAGAGATCGCTTAAAGATCATATCAAAGCCTTTGGAAATGGGCATGCTGCTTATAATAGTAATATTAATAACAACTGTGATCATCGTCAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATGCGTTCGATGAGGAGGACGAGTCGGCTTATTCTGAAGTCGAGGAAGATCATGATTGA | 1077 | 45.4 | MDDPSTNFFTDLFKFNYPTNFHHHHNPPSSNPPPNFFHAPPSSPPLRQALPLLRLSPTRSSQDHHLSFTSSSAMEIDNNNNHNNDNEDVSVTVALHIGLPSSNASEMATLLVSDNNNQNEEEDQLEEELEEEEDEDEEQQQAGITISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNSNINNNCDHRQQQHHHHHHHHHHHHHAFDEEDESAYSEVEEDHD | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 9954659 | 9956500 | - | Cp4.1LG08g13880.1 | Cpe08g01384 | 474350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g01384 | 358 | Coils | Coil | 108 | 142 | - | - | |
| Cpe08g01384 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 177 | 197 | IPR013087 | - | |
| Cpe08g01384 | 358 | PANTHER | ZINC FINGER PROTEIN WIP2 | 22 | 317 | IPR043584 | GO:0003700|GO:0010468 | |
| Cpe08g01384 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 259 | 279 | IPR013087 | - | |
| Cpe08g01384 | 358 | MobiDBLite | consensus disorder prediction | 27 | 47 | - | - | |
| Cpe08g01384 | 358 | Gene3D | Classic Zinc Finger | 218 | 305 | - | - | |
| Cpe08g01384 | 358 | SMART | c2h2final6 | 259 | 279 | IPR013087 | - | |
| Cpe08g01384 | 358 | SMART | c2h2final6 | 175 | 197 | IPR013087 | - | |
| Cpe08g01384 | 358 | MobiDBLite | consensus disorder prediction | 119 | 140 | - | - | |
| Cpe08g01384 | 358 | MobiDBLite | consensus disorder prediction | 117 | 147 | - | - | |
| Cpe08g01384 | 358 | Gene3D | Classic Zinc Finger | 174 | 197 | - | - | |
| Cpe08g01384 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 241 | 279 | IPR036236 | - | |
| Cpe08g01384 | 358 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 22 | 317 | - | - | |
| Cpe08g01384 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 175 | 202 | IPR013087 | - | |
| Cpe08g01384 | 358 | MobiDBLite | consensus disorder prediction | 24 | 47 | - | - | |
| Cpe08g01384 | 358 | MobiDBLite | consensus disorder prediction | 317 | 358 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00391 | Cpe08g01384 | CCT | |
| Cpe03g00391 | Cpe08g01384 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01384 | Cpe-Chr8:9954659 | Cpe10g01159 | Cpe-Chr10:8500987 | 8.00E-132 | dispersed | |
| Cpe03g00391 | Cpe-Chr3:2114959 | Cpe08g01384 | Cpe-Chr8:9954659 | 1.01E-175 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49944 | None | None | None | None | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g01384 | - | - | csv:101208110 | 436.417 |