Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g01391 ATGCTGCAACAGCGTCCGTTTACGTATTTTAGTGTCGTAGTCTATTCGATGATTCTCACTTCGCTGGCTCGGGCGTTCACTAACAGGCCGGATGTTGCAGCTCTTCAGGATCTGTACGGTGCTTTGAACTATCCACATGAGCTTATAGGATGGAGAAAATATGGTGGTGATCCTTGTGTGGAATCATGGACGGGAGTATCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCCGCGATTTAAACCTCACTGGGAATCTTGGAGGGCAGCTTAACAACCTCAACAATTTGAAGCAACTGGATGTTAGCTCGAATAGACTTACGGGTGAAATTCCCCATAGCTTGCCTCATAATGCAACTCATATAAATATGGCATTCAACCATTTAAGCCATAACATTCCACATACTTTATCTTACATGGGAAATCTCCGACATTTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTGTCATATAATGACTTCACTGGAGATTTGCCAAGATCATTAGGTTCCTTGACAAACATGTCTAGACTGTTCTTGCAGAACAACAAATTTACAGGATCAGTTGCCTACTTGTCTCCACTTCCATTAACTGACTTGAACATCCAGGACAATTGTTTTAGTGGCATTATTCCAGAAAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAAGTTTCATGCAAGAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTATGGTGCGAAACATCAGTGGTCCTCCAACAACCAAGTCGAATTCAATCCAGAATTATCCCTCTCGTGGTGTCAGGCAAGAGAAGAAAAGGCTTGGTCCTGGTGGAATACTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGCAGCTCTCTTCATTGTATTCGCCATTAGCAATATGATACACCGATCATTCGCTCTGGGCAAAGCTGAAGATGGTTTGTCCACCGCACCAGAAGAAAACTCACAGAGCTTGCCCCTGAGTTCTCTACTCATGGGTGGTCAAAGGTCTATAGCTTCATTAAATCGCACGAGAACTGAGAAAGTTTCTGGAAGACAAGGTTTCTCAAAGAGATGCAATCTCCCAGTGGGAACAAAAATGTACACTCTGGCAGAGCTTCAATCAACCACAAACAACTTTAGTCAAGAGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAACATCAACATGGGAGCACTCTCTCTTACAGAAGAAGAGAAATTTCTGGATGTCGTATGGACTGCATCCCGTTTGAGGCACCCGAACATTGTTACACTGCTTGGATATTGTGCAGAGCATGGACATTATTTCCTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGAAGCTTTACACTGTGAATCTTTTATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCATAGAAGTTTTTTCCCGCCAGTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGACGAAGAACTGATTCCTCGTATTTATGGTTGTGGGCTGTCTGTTGCGAGGCGACTTGTGACCAGCAGAGTTAAAACGAAGGCTTCTGAGATTGCCAGTGGTGACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCCTTTGGAGTGTTGCTTTTGGAGCTTGTCACTGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAACAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGTCATTAAAGGAACATTTTCCTCCAAGTCCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGCATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCGGAGAAAGATGGAGACGACGAAACATGCTGCATCAGAAGGAACTGAAATGGATCCTTTTGAGAAGTCTTTTCGTTCAGCTAACACTGGTTTCTTAAGCTCGCCAGCTTACAGCTATTCTGCCACCTCAGTTTAG 2178 43.53 MLQQRPFTYFSVVVYSMILTSLARAFTNRPDVAALQDLYGALNYPHELIGWRKYGGDPCVESWTGVSCSGSSVIYLKLRDLNLTGNLGGQLNNLNNLKQLDVSSNRLTGEIPHSLPHNATHINMAFNHLSHNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPRSLGSLTNMSRLFLQNNKFTGSVAYLSPLPLTDLNIQDNCFSGIIPENFRTIPNLWIGGNKFHARVNSPPWDFPLEKAPMVRNISGPPTTKSNSIQNYPSRGVRQEKKRLGPGGILLLVGGLTLVVTFAALFIVFAISNMIHRSFALGKAEDGLSTAPEENSQSLPLSSLLMGGQRSIASLNRTRTEKVSGRQGFSKRCNLPVGTKMYTLAELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGALSLTEEEKFLDVVWTASRLRHPNIVTLLGYCAEHGHYFLGYEYVRNLSLDEALHCESFMPLSWTVRLQIALGVARALDYLHRSFFPPVAHCNLKAANILLDEELIPRIYGCGLSVARRLVTSRVKTKASEIASGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPVIKGTFSSKSLSRFVDIISLCIQPVKEFRPPMSEIVEHLTNLRRKMETTKHAASEGTEMDPFEKSFRSANTGFLSSPAYSYSATSV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10000505 10007203 - Cp4.1LG08g13960.1 Cpe08g01391 474357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g01391 725 SUPERFAMILY Protein kinase-like (PK-like) 379 678 IPR011009 -
Cpe08g01391 725 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cpe08g01391 725 ProSiteProfiles Protein kinase domain profile. 402 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01391 725 Gene3D Transferase(Phosphotransferase) domain 1 480 704 - -
Cpe08g01391 725 SUPERFAMILY L domain-like 27 238 - -
Cpe08g01391 725 Pfam Leucine rich repeat 120 177 IPR001611 GO:0005515
Cpe08g01391 725 Pfam Leucine Rich Repeat 96 116 IPR001611 GO:0005515
Cpe08g01391 725 Gene3D Phosphorylase Kinase; domain 1 362 479 - -
Cpe08g01391 725 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 693 - -
Cpe08g01391 725 SMART LRR_typ_2 164 188 IPR003591 -
Cpe08g01391 725 SMART LRR_typ_2 94 118 IPR003591 -
Cpe08g01391 725 SMART LRR_typ_2 140 163 IPR003591 -
Cpe08g01391 725 Gene3D Ribonuclease Inhibitor 28 264 IPR032675 -
Cpe08g01391 725 Pfam Protein kinase domain 403 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g01391 725 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 5 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g01391 - - - csv:101204194 1140.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00382 Cpe08g01391 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00382 Cpe-Chr3:2047911 Cpe08g01391 Cpe-Chr8:10000505 0 dispersed
Cpe08g01391 Cpe-Chr8:10000505 Cpe20g00626 Cpe-Chr20:3917624 4.11E-177 dispersed
Cpe03g00381 Cpe-Chr3:2041342 Cpe08g01391 Cpe-Chr8:10000505 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe20g00626 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.2e-85 313.2
Cpe12g00545 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.3e-83 307.4
Cpe17g00420 CCT,CST 430 718 Strubbelig Receptor Gene Family AT1G11130 52.6 1.2e-82 305.1
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe03g01037 . 1 724 Strubbelig Receptor Gene Family AT1G53730 59.6 2.3e-211 732.6
Cpe02g01752 CCT 557 1203 Strubbelig Receptor Gene Family AT1G53730 56.9 7.8e-183 637.9
Cpe17g00420 CCT,CST 33 731 Strubbelig Receptor Gene Family AT1G53730 59.1 8.9e-179 624.4
Cpe12g00545 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.9 1.3e-177 620.5
Cpe20g00626 . 4 689 Strubbelig Receptor Gene Family AT1G53730 50.5 8.7e-142 501.5
Cpe15g00790 CST 461 753 Strubbelig Receptor Gene Family AT1G53730 57.3 6.6e-89 325.9
Cpe03g01037 . 8 719 Strubbelig Receptor Gene Family AT3G14350 50.8 2.0e-180 629.8
Cpe17g00420 CCT,CST 42 729 Strubbelig Receptor Gene Family AT3G14350 54.2 5.2e-160 562.0
Cpe12g00545 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.6 9.2e-157 551.2
Cpe15g00790 CST 460 761 Strubbelig Receptor Gene Family AT3G14350 52.6 7.2e-77 285.8
Cpe20g00626 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.6 3.2e-168 589.0
Cpe03g01037 . 408 731 Strubbelig Receptor Gene Family AT4G22130 63.8 2.1e-119 426.8
Cpe12g00545 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-117 419.9
Cpe17g00420 CCT,CST 424 733 Strubbelig Receptor Gene Family AT4G22130 65.4 2.9e-116 416.4
Cpe04g00762 CST 450 774 Strubbelig Receptor Gene Family AT4G22130 56.8 3.5e-106 382.9
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT4G22130 60.3 8.7e-105 378.3
Cpe01g00878 . 407 724 Strubbelig Receptor Gene Family AT4G22130 55.7 5.8e-101 365.5
Cpe02g00968 . 332 573 Strubbelig Receptor Gene Family AT4G22130 75.2 5.7e-96 349.0
Cpe03g00381 . 392 714 Strubbelig Receptor Gene Family AT4G22130 51.7 8.5e-92 335.1
Cpe02g01752 CCT 953 1219 Strubbelig Receptor Gene Family AT4G22130 51.1 1.8e-86 317.4
Cpe03g00382 CCT 281 582 Strubbelig Receptor Gene Family AT4G22130 50.3 1.1e-80 298.1
Cpe10g00833 . 439 622 Strubbelig Receptor Gene Family AT4G22130 54.9 2.4e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62579 PF00069 Pkinase 2.40E-33 CL0016 Cpe PK