Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00002 ATGATCAGAGAAGTAGAAATTTTGAGGCAAGACTTTCCTTTTGATCGCATCATCAAAATGGAGTTGAACGGCAAATCCATGGTCTCTGCAAACGTTATTTATCTTTCAACTATTCTGGGTAGAGATGAGCAAGTTGTTGCCCACAAATGTGATTGGAAATGTGAGAATGAACATGTGTGTGGTAATATGTACCGCTGCAAACTTACAGGAATGACTCACATTTGTGACAAAAACTGTGACCAAAGAATTGTGTATGATAACCATAGCTCACTTTGTCGTGCAAGTGGGCAAATTTTCCCGCTTACACTGACAGAGGAACAAGCAATCAGAGGCATTCGCAGGAAACTTGATGCTGACAGTTCCTCCGTTGATGATTTTGGTTTTAAGCGTAGGCGGGATGCCCAGTTTCATCCTTCACCTTTTGAGAGATCTTTCTCTGCTGCCGTCCCAATTTGTAGTCAAGTTGGAGATGGCATGGATATGATGAGCTAG 492 42.07 MIREVEILRQDFPFDRIIKMELNGKSMVSANVIYLSTILGRDEQVVAHKCDWKCENEHVCGNMYRCKLTGMTHICDKNCDQRIVYDNHSSLCRASGQIFPLTLTEEQAIRGIRRKLDADSSSVDDFGFKRRRDAQFHPSPFERSFSAAVPICSQVGDGMDMMS 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10107 11669 - Cp4.1LG09g00150.1 Cpe09g00002 474368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00002 163 PANTHER EXPRESSED PROTEIN 20 161 - -
Cpe09g00002 163 PANTHER EXPRESSED PROTEIN 20 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00002 - - - cmax:111467357 328.946
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00002 Cpe14g00002 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00002 Cpe-Chr14:19161 Cpe09g00002 Cpe-Chr9:10107 2.57E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g936 . . . . Bpe03g00221 . . . . . . . . . . . Cpe14g00002 . . . . . . . . . . . . . . . . . . . . . . Blo07g00302 . . . . . . . . . . . Cma18g01349 . . Cpe09g00002 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008052 1 2 1 0 1 1 1 1 1 0 1 0 0 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00002 Cpe_Chr09 FPKM 5.512195 10.380258 10.473658 6.97724 11.51754 9.250777 10.995903 6.622373 7.984574 10.929877