Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00007 TGCATGGCTAATTTGCAAATAGTTCCGGCTCACACCCCATTTCATGTGGAGCCTCAGCTGGTGGAGATGATGGTTCCCCTTTATTCTCATGGTTGCGCCAACAAAATCCACAAGGCTCTCTCCCATCTCAAAGGGATATATTCAGTTAACGTAGATTACGACGAGCAGAAAGTGACGGTGTGGGGAATATGCAACAAAAACCAAGTGTTGAGCACTGTGAGAAGCAAGAGAAAAGCAGCTCGTTTTTGGAACACTGATGATGATGATAATAATAATAATGATCCACAAGCAGAAGAAGAAGGTCTAAACTCAAGAAGGCCTTCTTTTGGTGTTAACAAGCTTCGTTCCCTCAGTTTCAAATTAGCCTGCAAGAAGGTTTTCACCACTACAAGATCATATTCCTTGCGTATCTTTGGGGCTCCTACTGTTTCCTAA 435 42.99 CMANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKGIYSVNVDYDEQKVTVWGICNKNQVLSTVRSKRKAARFWNTDDDDNNNNDPQAEEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYSLRIFGAPTVS 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33843 34519 + Cp4.1LG09g00020.1 Cpe09g00007 474373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00007 144 Pfam Heavy-metal-associated domain 24 62 IPR006121 GO:0046872
Cpe09g00007 144 Gene3D - 17 82 - -
Cpe09g00007 144 MobiDBLite consensus disorder prediction 83 106 - -
Cpe09g00007 144 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 107 IPR045181 GO:0046872
Cpe09g00007 144 SUPERFAMILY HMA, heavy metal-associated domain 19 84 IPR036163 GO:0046872
Cpe09g00007 144 PANTHER HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN 2 107 - -
Cpe09g00007 144 CDD HMA 22 62 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00007 - - - cmax:111467638 277.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00007 Cpe-Chr9:33843 Cpe10g00575 Cpe-Chr10:3353347 4.83E-10 dispersed
Cpe09g00007 Cpe-Chr9:33843 Cpe03g01346 Cpe-Chr3:10916869 6.12E-10 transposed
Cpe09g00007 Cpe-Chr9:33843 Cpe08g01145 Cpe-Chr8:8535300 7.25E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g950 . . . . . . . . . Cmo18g01379 . . . . . . . . . . . . . . . . . . . . . Cone1ag1030 Cone5ag0737 . . . . . . . . . . . . . . . . . . Cma18g01345 . Car18g01257 Cpe09g00007 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014623 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 1 1 2 1 1 0 1 0 1 1 0 1 1 1 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00007 Cpe_Chr09 FPKM 10.842794 12.120721 13.477747 13.956538 17.706196 17.411079 19.470377 19.469402 17.603947 20.225534