Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00011 ATGGCGGTTCCTGAGAATGTTGGACCCAAAATCGGTTCTCCAAGTCAAACTTTGGAAAATACCATGGTTTCCTCCGATTCTAATGACCCCAACGATGTTGAGACTCAGAAGCCCAACAGCGATTCTACGGTCCCCATGAATGGAGAACCCGACTTTCATTCCAACGGCAATGATCACGATGTACAGATGAAGGCACAGCTTCAGGAGAGAGCAGCTACCGCTGCTTCCTTTTCACTTCCTTCAGCCAATTTCAAGCCTCAAATGCCTCAGATGCTCAACGGGTTTGAAGCTAATGCCCAGACGCTGATGGTGAAGTCTGCTGCCGGGTATGGGATGAATCAGAGGCCTAACGGAGTGATAAATGGAGCGGATGGAGGAGAAAACTTTAAGAGGGACATGAGCGATCTGGAGGACTTACTATCCAAATTGAATCCCATGGCTGAGGAATTTATCCCTCCTTCGCTTGGTAAAAATTTGTCTGGTTACTTCGGCGCTGGTGGGCTTGGGTATACTAACGACTTTCTATTGCAAGCTAATTCTGTCAACAACGAAGGGCATATGAATCGAAGGATACATAACCCCTGCCCTCCCCTCAGAATAACACTGCAAAACAACCACCTTTTCACCACTACTCTTTCTCTTATCATGGCGGTTCCTGAGAATGTTGGACCCAAAATCGGTTCTCCAAGTCAAACTTTGGAAAATACCATGGTTTCCTCCGATTCTAATGACCCCAACGATGTTGAGACTCAGAAGCCCAACAGCGATTCTACGGTCCCCATGAATGGAGAACCCGACTTTCATTCCAACGGCAATGATCACGATGTACAGATGAAGGCACAGCTTCAGGAGAGAGCAGCTACCGCTGCTTCCTTTTCACTTCCTTCAGCCAATTTCAAGCCTCAAATGCCTCAGATGCTCAACGGGTTTGAAGCTAATGCCCAGACGCTGATGGTGAAGTCTGCTGCCGGGTATGGGATGAATCAGAGGCCTAACGGAGTGATAAATGGAGCGGATGGAGGAGAAAACTTTAAGAGGGACATGAGCGATCTGGAGGACTTACTATCCAAATTGAATCCCATGGCTGAGGAATTTATCCCTCCTTCGCTTGGTAAAAATTTGTCTGGTTACTTCGGCGCTGGTGGGCTTGGGTATACTAACGACTTTCTATTGCAAGCTAATTCTGTCAACAACGAAGGGCATATGAATCGAAGGAAGAAGAATGGTTTTAGCCAAGGGAGAAGGAGGATGAATAATAAGATGAATGCGGTGAAGAGGGATGAGATGACCCGGAGGACGGTGTATGTATCAGACATCGATCAGCAGGTGACTGAAGAGCTACTTGCTACTGTCTTTGCTGGCTGTGGAGAGGTTGTTGACTGTCGTATCTGCGGTGATCCCAACTCCATTCTTCATTTTGCCTTCATTGAGTTCACGGATGAAGAGGGTGCAAGAGCTTCCTTGAGTCTTTCAGGGACAGTTCTTGGTTTCTATCCAGTTAGAGTGCTGCCCTCAAAAACTGCCATAGCACCTGTCAATCCTGACTTTTTACCCAGGTCGGATGATGAACGTGAGATGTGCTCAAGAACTATCTATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGAGGTCAAGCTGTTCTTTGAATCACTATGTGGAGAGGTTCAGCGCCTTAGGCTACTTGGAGATTATCATCATTCCACTCGTATAGCTTTTGTTGAGTTTACCATGGCTGAGAGTGCAATTGCTGCACTTAATTGCAGTGGAGTGGTGTTGGGTTCCCTGCCAATAAGGGTAAGCCCATCAAAGACCCCAGTTCGCCCTCGCTCTCCTCGTGCCCAGCTGAACTGA 1854 47.14 MAVPENVGPKIGSPSQTLENTMVSSDSNDPNDVETQKPNSDSTVPMNGEPDFHSNGNDHDVQMKAQLQERAATAASFSLPSANFKPQMPQMLNGFEANAQTLMVKSAAGYGMNQRPNGVINGADGGENFKRDMSDLEDLLSKLNPMAEEFIPPSLGKNLSGYFGAGGLGYTNDFLLQANSVNNEGHMNRRIHNPCPPLRITLQNNHLFTTTLSLIMAVPENVGPKIGSPSQTLENTMVSSDSNDPNDVETQKPNSDSTVPMNGEPDFHSNGNDHDVQMKAQLQERAATAASFSLPSANFKPQMPQMLNGFEANAQTLMVKSAAGYGMNQRPNGVINGADGGENFKRDMSDLEDLLSKLNPMAEEFIPPSLGKNLSGYFGAGGLGYTNDFLLQANSVNNEGHMNRRKKNGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFAGCGEVVDCRICGDPNSILHFAFIEFTDEEGARASLSLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRAQLN 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 50087 56425 + Cp4.1LG09g00050.1 Cpe09g00011 474377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00011 617 Pfam Ataxin-2 C-terminal region 356 369 IPR009818 -
Cpe09g00011 617 Pfam Ataxin-2 C-terminal region 141 154 IPR009818 -
Cpe09g00011 617 MobiDBLite consensus disorder prediction 225 273 - -
Cpe09g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 432 507 IPR000504 GO:0003723
Cpe09g00011 617 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 216 617 - -
Cpe09g00011 617 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 176 - -
Cpe09g00011 617 MobiDBLite consensus disorder prediction 225 265 - -
Cpe09g00011 617 Gene3D - 392 509 IPR012677 -
Cpe09g00011 617 Gene3D - 515 613 IPR012677 -
Cpe09g00011 617 MobiDBLite consensus disorder prediction 10 50 - -
Cpe09g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 531 598 IPR000504 GO:0003723
Cpe09g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 434 496 IPR000504 GO:0003723
Cpe09g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 605 IPR000504 GO:0003723
Cpe09g00011 617 SUPERFAMILY RNA-binding domain, RBD 518 611 IPR035979 GO:0003676
Cpe09g00011 617 SMART rrm1_1 433 503 IPR000504 GO:0003723
Cpe09g00011 617 SMART rrm1_1 530 601 IPR000504 GO:0003723
Cpe09g00011 617 CDD RRM1_CID8_like 431 509 IPR034823 -
Cpe09g00011 617 MobiDBLite consensus disorder prediction 1 58 - -
Cpe09g00011 617 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 216 617 - -
Cpe09g00011 617 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 176 - -
Cpe09g00011 617 CDD RRM2_CID8_like 525 606 IPR034825 -
Cpe09g00011 617 SUPERFAMILY RNA-binding domain, RBD 396 508 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00011 - - - cpep:111801994 1213.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00011 Cpe14g00018 CCT
Cpe09g00011 Cpe14g00018 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00582 Cpe-Chr1:3370637 Cpe09g00011 Cpe-Chr9:50087 9.92E-67 dispersed
Cpe09g00011 Cpe-Chr9:50087 Cpe14g00386 Cpe-Chr14:2366234 2.63E-107 dispersed
Cpe14g00018 Cpe-Chr14:110863 Cpe09g00011 Cpe-Chr9:50087 4.66E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00011 Cpe_Chr09 FPKM 13.992559 14.930731 4.616998 5.05946 10.39704 9.91293 10.251943 2.061211 2.013688 2.187773