Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00015 ATGATGAATGAAGCAAAACCAGCCCTCCAATCTTTGACACCAAGGGGCACTGCCCAATCTTCTCCTCCTGCAGTGTACTCCGGGCTACACCCTACCATCTGTATCGGAGACAACCGAGTTCCATTCTTCATTGGGCTTCGGCTCATTTGCGTTCCTCCCCCTGAACTCGACGAGTCACAACCCAACCCGAAAACCGATCTTTTTTGGTGGCAGTTGTGGGTGCGATATAAGACTCACGTGCGTTGGAATGAGGAACATGATATGGGTGGGAACACATCCAATGCTGGAGCCAATTGGCCTTGTCATGACAAGTGTCAGAATGTTGCTGATATGGAGAAGCCTAACAGGGGAAGGACGAGAGATGAAAACCCAAACCTTGTTGTGGAACTCGGGCGAGGTGAAGTCCTTAAAAGAAGAAGAAGAAGAAGATTTGAAGACTTTCTTGACGGTGGAGAACCAGCGGGCAGTTGGTTTCTTCCCCATCTGCAGCCACCGGAAACAGATCAAAGGCGTTCAAAAGCAAGGAAAAAGAATTCAGTGACCGGCAGGAGTGAAGGTAGGGGTCGCGACCATCAGCTTGAAGAGGTTGGATTAAGCGGGCATTGGAAAATGAAGAAGAGAAGCGGTAGACACTGTGTTTCCAATTATATTCACTCTGCTAGCAATCCCATTTCCCACTGCGCGAGTCGTAACAAATCGAATGACCTCTATCTCAGCTCGCCTTTCCACTTGGTCTCTTTCAAGTCGGTTTCACTTAGAGGCGACTTTCTCCACGACGGGACTCAACCTTTCGATCATCGGAGGGCTTATCCGAATCCCAACAAGAACCTGAATGAGAGGTTGAGCAGGGGCGGTTGTTTTATGAGCACTTATGGGGACCCGCCTGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGGATGGTCGTGGTGGTGGCGGTGGTGGAAGCGCTAACTCTGGTTCTGGTGGAAGTGGGTTTGGCGCGAACTCGAATGATGGGTGTTGGGGTGGTTCCAGTTTGGGTCCTAATTTTCCAACCCCGAAGGAAATCTCCAAGGGGCTTGATAAGTTTGTAATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCGTTGCAAAGGCCTACAGGAGATACGGTTACCAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTTCTCGCTAAAACCTTGGCACGCTTTGTTAATGTTCCTTTTGCGGGATATGTTGGAGAAGACGTGGAGTCTATATTGTACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATAGACGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTAAACGTGCCTGAGAAAGGTGCAAGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATTGACTTAGAAAAAACTATCTCAGAAAGGCGACAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAAGTGGTGTTACAGATGCCATCGTTGAAAGTAGTGACCTCATTGCATATGGGTTAATACCCGAATTTGTTGGTCGATTCCCCATCCTCGTCAGTTTGTCAGCCCTAACAGAAGACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCGCTGGGAAAGCAGTATAGAAAGATGTTCCAGATGAATGACGTCAAGCTCCACTTCACAGAAAATGCCTTGAGATTAATTGCAAGAAAGGCAATGTCTAAGAACACTGGAGCACGGGGTTTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTACGAGATTCCTGATGTCAGAACAGGTGAGGATATAATCGATGCTGTTATCATTGATGAAGAATCCATTGGGTCAGACAGCACGGGTTGTGGCGCTAAAATTCTTTACGGAAAGGGAGCATTGGATCGCTATCTTTCAGGACAAAAGACTACAAGTCAGGGTTCCGAAAAAGAAGCAGAACCTGAAAGTGAAACAGATCTTCCTTCAGTTGCTGCCAGCAGCATACACCTGGGGAATACAGGAACAACCCCAGGGGGTAGAGACGACCAAGAAAGGAACCTCCATCTTTCGGATAGTATCGAGTGTGTATCATCTTCCGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATTCTTATTCCCATTCTCATCATCATCCCGAGTTGTCAGCAACCAAGCCTCGCAATGGAAACAATAATAGCGCTGTAGCAGGCCCCACTGCCACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGACATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAGATATTATTCCTTGGGATGCCCAGAAATATTTCCTTACTACAGTAAACTCAAGCACGAAGCATTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTTCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACGGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTGTATATGGCTTTCCTTCGTTTCATGGGCGACGAGAATGAGGCGCGAACCTACAGCTACAGTCTGGAGGTGGGTGGATATGGGCGAAAACTGATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGCCATCGAAAAGTGAGGGATAGCCATGATGGGCTGATGATTCAAAGAAATATGGCTCTGTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGGGTCTGCATACCCAACCTTATCGAGTGTGTCTCGTCGTCCGATGGTCTCGATGAGGATGACATCCATTTGCACCACACTCTTCATCCTTATTCTCACTCTCATCATCACCCCGAGTTGTCAGCATCGAAGCCTCGTAATGGTAACAACAACAGCGCTGTGAACGACCCCACTGCCACTGCGCCGTCGACTAGCGTCCATGAATTGCTCGAATGCCCTGTCTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACTTGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCCCTGGGATGCCCTGAGATATTTCCGTACTATAGTAAACTTAAGCATGAGGCTCTATGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCCTTTCTTGTCGCCCATCTGAGGGACGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAAGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTCGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGAGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAAGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTCGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATTCAAAGAAATATGGCTCTTTTCTTCTCAGGCGGGGATAGAAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACGCAGATGCTGGAGCCTGCATTCCGAACCTTTGTAGCTAA 4269 47.22 MMNEAKPALQSLTPRGTAQSSPPAVYSGLHPTICIGDNRVPFFIGLRLICVPPPELDESQPNPKTDLFWWQLWVRYKTHVRWNEEHDMGGNTSNAGANWPCHDKCQNVADMEKPNRGRTRDENPNLVVELGRGEVLKRRRRRRFEDFLDGGEPAGSWFLPHLQPPETDQRRSKARKKNSVTGRSEGRGRDHQLEEVGLSGHWKMKKRSGRHCVSNYIHSASNPISHCASRNKSNDLYLSSPFHLVSFKSVSLRGDFLHDGTQPFDHRRAYPNPNKNLNERLSRGGCFMSTYGDPPEVWSGDGIVIRGSNSSLDGRGGGGGGSANSGSGGSGFGANSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVTNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRASGVTDAIVESSDLIAYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDVRTGEDIIDAVIIDEESIGSDSTGCGAKILYGKGALDRYLSGQKTTSQGSEKEAEPESETDLPSVAASSIHLGNTGTTPGGRDDQERNLHLSDSIECVSSSDGLDEDEIHLHHTLHSYSHSHHHPELSATKPRNGNNNSAVAGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCRYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLMIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLIECVSSSDGLDEDDIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNDPTATAPSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPKEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNADAGACIPNLCS 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 86520 107671 - Cp4.1LG09g00310.1 Cpe09g00015 474381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 166 193 - -
Cpe09g00015 1422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 691 IPR027417 -
Cpe09g00015 1422 ProSiteProfiles Zinc finger SIAH-type profile. 1214 1274 IPR013010 GO:0008270
Cpe09g00015 1422 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 349 696 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 1132 1150 - -
Cpe09g00015 1422 ProSiteProfiles Zinc finger RING-type profile. 837 873 IPR001841 -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 155 193 - -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 1 23 - -
Cpe09g00015 1422 SUPERFAMILY RING/U-box 825 876 - -
Cpe09g00015 1422 SMART AAA_5 413 565 IPR003593 -
Cpe09g00015 1422 CDD Sina 951 1079 - -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 808 823 - -
Cpe09g00015 1422 SUPERFAMILY TRAF domain-like 1214 1406 - -
Cpe09g00015 1422 ProSiteProfiles Zinc finger RING-type profile. 1161 1197 IPR001841 -
Cpe09g00015 1422 SMART ClpB_D2_small_2 606 696 IPR019489 -
Cpe09g00015 1422 Pfam AAA domain (Cdc48 subfamily) 413 599 IPR003959 GO:0005524|GO:0016887
Cpe09g00015 1422 CDD RING-HC_SIAHs 835 873 - -
Cpe09g00015 1422 SUPERFAMILY TRAF domain-like 890 1082 - -
Cpe09g00015 1422 CDD AAA 414 515 - -
Cpe09g00015 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 889 IPR013083 -
Cpe09g00015 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1269 IPR013083 -
Cpe09g00015 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 890 945 IPR013083 -
Cpe09g00015 1422 Gene3D - 605 705 - -
Cpe09g00015 1422 SUPERFAMILY RING/U-box 1150 1200 - -
Cpe09g00015 1422 CDD Sina 1275 1403 - -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 309 330 - -
Cpe09g00015 1422 CDD RING-HC_SIAHs 1159 1197 - -
Cpe09g00015 1422 Gene3D - 346 604 IPR027417 -
Cpe09g00015 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1120 1213 IPR013083 -
Cpe09g00015 1422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 771 1089 - -
Cpe09g00015 1422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1096 1414 - -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 1118 1150 - -
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 794 823 - -
Cpe09g00015 1422 Pfam C-terminal, D2-small domain, of ClpB protein 606 676 IPR019489 -
Cpe09g00015 1422 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1270 1402 IPR008974 GO:0005515
Cpe09g00015 1422 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 946 1078 IPR008974 GO:0005515
Cpe09g00015 1422 MobiDBLite consensus disorder prediction 720 742 - -
Cpe09g00015 1422 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1096 1414 - -
Cpe09g00015 1422 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 771 1089 - -
Cpe09g00015 1422 Pfam Seven in absentia protein family 879 1078 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe09g00015 1422 Pfam Seven in absentia protein family 1203 1402 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe09g00015 1422 ProSiteProfiles Zinc finger SIAH-type profile. 890 950 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00976 Cpe-Chr2:8752742 Cpe09g00015 Cpe-Chr9:86520 0 dispersed
Cpe02g01467 Cpe-Chr2:12624226 Cpe09g00015 Cpe-Chr9:86520 4.35E-21 dispersed
Cpe09g00015 Cpe-Chr9:86520 Cpe12g00474 Cpe-Chr12:4513988 9.23E-168 dispersed
Cpe10g01153 Cpe-Chr10:8364181 Cpe09g00015 Cpe-Chr9:86520 1.43E-151 dispersed
Cpe19g00084 Cpe-Chr19:653947 Cpe09g00015 Cpe-Chr9:86520 6.48E-153 dispersed
Cpe14g00039 Cpe-Chr14:210301 Cpe09g00015 Cpe-Chr9:86520 0 transposed
Cpe01g01997 Cpe-Chr1:17053508 Cpe09g00015 Cpe-Chr9:86520 4.52E-22 transposed
Cpe14g00038 Cpe-Chr14:204288 Cpe09g00015 Cpe-Chr9:86520 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00015 K03544 - csv:101215939 885.56