Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00030 ATGATAATCAAACGCAATCTCAAATCCCAAATGCCGAATCTCAAACGGTGTAAACTCGCCGACTCGCTTGCTGAAGACGACGAAACCTCCGCCGCCAGGAAGAAGAGAAAGCTAAATGGTTATTACCCACTTCATCTTCTCGGCGAGGTTGCCGCTGGAATAATCCCTCTGAATCTTCACCACATTCTCGGCACCAACAACAAGGGGATTACGCCGTCGTGGGCTACCCAGATATCATGTTCCGCCATGGAAATGGAGTCCAAGTCGAACAGCCGAGAATCATTAGCAAGGGAAGCTACGAAACGGCCGGCCGAGGTCCCACGACCGCCCCTCGTGAGAACTTCCAGAGGACGGGTTCAGGTTCTTCCTTCTCGATTCAACGATTCTGTTATCGAGAATTGGAAGAAAGACAGCAAGACTAGCTTGCGCGATTACAGTTTCGATGAGGAATTCAAGTGTAAAAAGGAGAAATTCAGTTTCAAGACTCCTAGAATTTGTAATGGGACCGCCAAGAAAGTACAGAACGGTGAGAAATTGGGTCTCAAGTTCGTGAAGTGCCCAGCATTTTGTGAAGAGGAGGAAGATGAACAAGCGGGTATGGAGTTCAAGAATTTCGATTTCAGGAAGTATTCCAGCTCTCGTAGTTCACTAACTTCCGTTCACGAGACTGTTGTTGAAGATGAGAAGTTCCCAGTTGATGTAGTTGGTGAAGATGCAAGTCCAAAGGAGACTAAACCCAAGGATGGTTTATATGGACCTGAAGACTTCTATTCAGGTGATATTGTATGGGCAAAGACAGGGAGGAAAGAGCCCTTTTGGCCTGCCATTGTCATCGATCCTATAACTCAGGCACCTGAACTAGTTTTGAGAGCTTGTGTTGCAGATGCAGCTTGCATTATGTTCTTTGGGTATTCAGGGAACGAAAATCAAAGGGATTATGCATGGGTGAGGCGAGGGATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAAGGACAGCCAGAATTGGATAGATTCAAACCTAACGAGTTCCAGATTGCAATAGAGGAAGCATTTCTTGCAGAACGTGGTTTTACAGAGAAATTGATTGCAGATATTAATATGGCAGCTGGAAATACGATTGCTGATGAATTCCTTTTCCGAGGGACTCAGGAAGCTACTGGTTCTAACCAGGATCCTGATTGCCACTCTCCTCCTAAGTGGACTAGCTGGATTAAGGAAATATATGCAAAGAAAGATGGACGGCATTGTGAGGGTTGTGGCCAAACACTTCCTGTAAAATTGGTGAAGAAAATGAAGGCTTCACATCCTGGAAGTCAATTTTTATGTAAATCATGCACAAGGTTAACGAATTCAAAACATTATTGCGGCATATGCAAAAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGTGATGGTTGTAAAGTATGGGTGCATGCAGCGTGTGACAAAATTTCAAGCAACCTGTTCAAGGATCTTGGAAGTACTGATTATTTCTGCCCTACATGCAAAGTAAAATTTGATTTTGAGCTATCAGATTCAGAAAAATCACGACCCAAAGTCAAAGGGAACACGGATAATGAACGAACGGTTCATTCTAACAAAGTTAATGTGCTCTGCAATGGTGTGGAAGGCACTTATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTCTTGCGGGACAGAAAAACAAGCACTTAGCGAGTGGGAACGGCATACTGGATCTAAGTCGAGGAATTGGAAGACCAGTGTGAGGGTAAAAGGTTCCATGCTGCCCCTAGAACAATGGATGCTGCAATTAGCCGAGTACCATGCAAGTGCTGCTTCTGTCAAGCATCCTAAACGGCCTTCCATGAAAGAACGAAGACAAAAGTTGCTCGCTTTTTTGCAGGAGAAATATGAACCTGTTTATGCAAAATGGACGACAGAAAGATGTGCTGTCTGTAGATGGGTTGAAGACTGGGACTACAATAAGATTATTATCTGCAACAGATGTCAAATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGATTTAACATCTTGGGTCTGTAAAGTGTGTGAAACTCCTGATGTTAAGCGGGAATGTTGCCTCTGTCCAGTAAAAGGGGGTGCCTTGAAGCCCACAGACGTCGATACATTATGGGTTCATGTTACCTGTGCTTGGTTTAGGCCTGAAGTCTCCTTTGCAAGTGATGAGAAAATGGAACCTGCTCTTGGTATCTTGAGTATCCCATCAAATTCTTTTGTAAAGATTTGTGTGATCTGTAAGCAAATTCACGGTTCATGCATGCAATGCTGCAAGTGCTCTACTTACTACCATGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCACTGCCTGGAGAAGAATGGTAGACAAGTCACGAAAATGGTATCTTATTGTGCTTATCATAGGGCTCCCAATCCGGATACCGTTCTTATCGTACAGACTCCTCTTGGTGTATTTTCTACTAAAAGCCTTCTTCAAAATAAGAAGAGAGCTGGTTCGAGGTTAATTTCATCTAGCAGAAAGGAAATAGAAGCAGTATCTGAAACTTCTGAGCTTGAGCCATTTTCTGCTGCAAGGTGTCAAGTTTATAAAAGATCAACCAGTGTGAAGAAGAGAACGGTAGAGGAAACGGTTATACACAAAGTGATGGGGCCACGCCGTCATCCCTTACAAGCATTACAAAGTCTTAATACATTCAGCTTACCGATGGTTGAGGAACCAAAGATATTTTCCTCATTTCGGGATCGATTGCACCACTTACAGAGAACGGAGAATGACCGGGTATGCTTCGGTAGATCTGGTATACATGGATGGGGGCTTTTCGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGGCGCACTATTGCTGACCTGAGGGAGGCGCGGTACAGATCGGCGGGCAAAGACTGCTATCTTTTTAAGATTAGCGAAGAAGTAGTTGTCGATGCCACCGACAAAGGAAATATAGCACGCTTGATCAACCATTCATGTATGCCCAACTGCTACGCAAGGATCATGAGTATGATTACTTGTTCGATCCCGATGAACCCGATGAATTCAAAGTCCCGTGTCTATGTAAAGCGCCAAACTAGAACGGTAGAGGAAACGGTTATACACAAAGTGATGGGGCCACGCCGTCATCCCTTACAAGCATTACAAAGTCTTAATACATTCAGCTTACCGATGGTTGAGGAACCAAAGATATTTTCCTCATTTCGGGATCGATTGCACCACTTACAGAGAACGGAGAATGACCGGGTATGCTTCGGTAGATCTGGTATACATGGATGGGGGCTTTTCGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGGCGCACTATTGCTGACCTGAGGGAGGCGCGGTACAGATCGGCGGGCAAAGACTGCTATGTTCTTGAATATCGTGGCGAACAAGTGAGGCGCACTATTGCTGACCTGAGGGAGGCGCGGTACAGATCGGCGGGCAAAGACTGCTATCTTTTTAAGATTAGCGAAGAAGTAGTTGTCGATGCCACCGACAAAGGAAATATAGCACGCTTGATCAACCATTCAGTAAGTCGTTTGCAGAAGTATGATTACTTGTTCGATCCCGATGAACCCGATGAATTCAAAGTCCCGTGTCTATGTAAAGCGCCAAACTGTCGGAAGTTCATGAATTAG 3759 44.4 MIIKRNLKSQMPNLKRCKLADSLAEDDETSAARKKRKLNGYYPLHLLGEVAAGIIPLNLHHILGTNNKGITPSWATQISCSAMEMESKSNSRESLAREATKRPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWKKDSKTSLRDYSFDEEFKCKKEKFSFKTPRICNGTAKKVQNGEKLGLKFVKCPAFCEEEEDEQAGMEFKNFDFRKYSSSRSSLTSVHETVVEDEKFPVDVVGEDASPKETKPKDGLYGPEDFYSGDIVWAKTGRKEPFWPAIVIDPITQAPELVLRACVADAACIMFFGYSGNENQRDYAWVRRGMIFPFMDFVDRFQGQPELDRFKPNEFQIAIEEAFLAERGFTEKLIADINMAAGNTIADEFLFRGTQEATGSNQDPDCHSPPKWTSWIKEIYAKKDGRHCEGCGQTLPVKLVKKMKASHPGSQFLCKSCTRLTNSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAACDKISSNLFKDLGSTDYFCPTCKVKFDFELSDSEKSRPKVKGNTDNERTVHSNKVNVLCNGVEGTYFPSLHLVVCKCGSCGTEKQALSEWERHTGSKSRNWKTSVRVKGSMLPLEQWMLQLAEYHASAASVKHPKRPSMKERRQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDLTSWVCKVCETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQVTKMVSYCAYHRAPNPDTVLIVQTPLGVFSTKSLLQNKKRAGSRLISSSRKEIEAVSETSELEPFSAARCQVYKRSTSVKKRTVEETVIHKVMGPRRHPLQALQSLNTFSLPMVEEPKIFSSFRDRLHHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTIADLREARYRSAGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSMITCSIPMNPMNSKSRVYVKRQTRTVEETVIHKVMGPRRHPLQALQSLNTFSLPMVEEPKIFSSFRDRLHHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTIADLREARYRSAGKDCYVLEYRGEQVRRTIADLREARYRSAGKDCYLFKISEEVVVDATDKGNIARLINHSVSRLQKYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 163417 175758 + Cp4.1LG09g00200.1 Cpe09g00030 474396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00030 1252 ProSiteProfiles Zinc finger PHD-type profile. 454 510 IPR019787 -
Cpe09g00030 1252 Gene3D - 253 359 - -
Cpe09g00030 1252 Pfam PHD-zinc-finger like domain 704 816 - -
Cpe09g00030 1252 SUPERFAMILY Tudor/PWWP/MBT 251 357 - -
Cpe09g00030 1252 SMART set_7 941 1071 IPR001214 GO:0005515
Cpe09g00030 1252 SMART set_7 1109 1233 IPR001214 GO:0005515
Cpe09g00030 1252 CDD ePHD_ATX3_4_5_like 705 816 IPR041955 -
Cpe09g00030 1252 SUPERFAMILY FYVE/PHD zinc finger 452 511 IPR011011 -
Cpe09g00030 1252 Gene3D - 529 613 IPR010919 -
Cpe09g00030 1252 CDD PHD_TCF19_like 457 507 - -
Cpe09g00030 1252 PANTHER PHD FINGER PROTEINS 1224 1252 - -
Cpe09g00030 1252 SMART PostSET_3 1236 1252 IPR003616 -
Cpe09g00030 1252 ProSiteProfiles Post-SET domain profile. 1236 1252 IPR003616 -
Cpe09g00030 1252 MobiDBLite consensus disorder prediction 90 104 - -
Cpe09g00030 1252 ProSitePatterns Zinc finger PHD-type signature. 651 696 IPR019786 -
Cpe09g00030 1252 Pfam PHD-finger 456 509 IPR019787 -
Cpe09g00030 1252 ProSiteProfiles SET domain profile. 1109 1252 IPR001214 GO:0005515
Cpe09g00030 1252 Pfam PWWP domain 259 353 IPR000313 -
Cpe09g00030 1252 MobiDBLite consensus disorder prediction 87 110 - -
Cpe09g00030 1252 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1031 - -
Cpe09g00030 1252 ProSiteProfiles Extended PHD (ePHD) domain profile. 702 817 IPR034732 -
Cpe09g00030 1252 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1045 1164 - -
Cpe09g00030 1252 CDD PHD_ATX3_4_5_like 650 696 IPR042011 -
Cpe09g00030 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 700 IPR013083 -
Cpe09g00030 1252 PANTHER PHD FINGER PROTEINS 1045 1164 - -
Cpe09g00030 1252 PANTHER PHD FINGER PROTEINS 1 1031 - -
Cpe09g00030 1252 PANTHER PHD FINGER PROTEINS 1164 1218 - -
Cpe09g00030 1252 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1252 IPR025780 -
Cpe09g00030 1252 ProSiteProfiles PWWP domain profile. 258 327 IPR000313 -
Cpe09g00030 1252 SUPERFAMILY FYVE/PHD zinc finger 649 713 IPR011011 -
Cpe09g00030 1252 Pfam PHD-finger 663 697 - -
Cpe09g00030 1252 SUPERFAMILY SET domain 1100 1252 IPR046341 -
Cpe09g00030 1252 ProSiteProfiles Zinc finger PHD-type profile. 648 699 IPR019787 -
Cpe09g00030 1252 SMART PHD_3 456 508 IPR001965 -
Cpe09g00030 1252 SMART PHD_3 761 817 IPR001965 -
Cpe09g00030 1252 SMART PHD_3 650 697 IPR001965 -
Cpe09g00030 1252 ProSiteProfiles SET domain profile. 941 1065 IPR001214 GO:0005515
Cpe09g00030 1252 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1224 1252 - -
Cpe09g00030 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 511 IPR013083 -
Cpe09g00030 1252 Gene3D SET domain 840 1053 IPR046341 -
Cpe09g00030 1252 Gene3D SET domain 1163 1250 IPR046341 -
Cpe09g00030 1252 Gene3D SET domain 1094 1162 IPR046341 -
Cpe09g00030 1252 SUPERFAMILY SET domain 935 1029 IPR046341 -
Cpe09g00030 1252 Pfam SET domain 1120 1218 IPR001214 GO:0005515
Cpe09g00030 1252 Pfam SET domain 952 1031 IPR001214 GO:0005515
Cpe09g00030 1252 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1164 1218 - -
Cpe09g00030 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 819 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00030 - - - mcha:111011609 1965.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00531 Cpe-Chr6:3188388 Cpe09g00030 Cpe-Chr9:163417 1.36E-19 dispersed
Cpe09g00030 Cpe-Chr9:163417 Cpe12g00460 Cpe-Chr12:4304067 1.42E-61 dispersed
Cpe12g00833 Cpe-Chr12:7397111 Cpe09g00030 Cpe-Chr9:163417 1.13E-06 dispersed
Cpe14g00044 Cpe-Chr14:239278 Cpe09g00030 Cpe-Chr9:163417 4.29E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49950 PF00856 SET 1.30E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00030 Cpe_Chr09 FPKM 0.134752 0.055692 0.326941 0.046764 0.942862 1.665276 1.637073 0.253221 0.953212 0.717722