Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00043 ATGGTTGCTAGTTTAGCTCAATTTTTCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCACTATGATCGCGGACGATATCGAACCAACCAAAGACGGCGAGGAGACCACAAGCTTGGTCTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGACGACTACGACAACGACGATGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCCATCTTGAGGACACTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCATTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGGCAACAATGATCTTGTGGCCAATTCAAAATCAGGCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACACTTGATCAAACCATGATTAACTCTTTCACAATTAAGGTATACACAAACAACAACAACAACACCAATAAAGTTTCAAGCTTTCTTCCTTAA 1050 44.76 MVASLAQFFQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFTMIADDIEPTKDGEETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTATASSGCTTNMANNNNNNNSLEPSPCNSSSTTYSSIDNANNGNNDLVANSKSGIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKVYTNNNNNTNKVSSFLP 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 252234 253663 - Cp4.1LG09g00440.1 Cpe09g00043 474409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00043 349 PANTHER TRANSCRIPTION FACTOR FAMA 1 337 IPR044283 GO:0003700|GO:0010052
Cpe09g00043 349 Gene3D - 91 163 IPR036638 GO:0046983
Cpe09g00043 349 CDD bHLH_AtFAMA_like 101 174 - -
Cpe09g00043 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Cpe09g00043 349 Coils Coil 142 162 - -
Cpe09g00043 349 MobiDBLite consensus disorder prediction 216 257 - -
Cpe09g00043 349 SMART finulus 104 155 IPR011598 GO:0046983
Cpe09g00043 349 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Cpe09g00043 349 MobiDBLite consensus disorder prediction 161 257 - -
Cpe09g00043 349 MobiDBLite consensus disorder prediction 182 215 - -
Cpe09g00043 349 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 337 - -
Cpe09g00043 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 173 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00043 Cpe14g00057 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00043 Cpe-Chr9:252234 Cpe08g00243 Cpe-Chr8:1599539 8.74E-15 dispersed
Cpe14g00057 Cpe-Chr14:313862 Cpe09g00043 Cpe-Chr9:252234 1.11E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49952 PF00010 HLH 4.30E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00043 K20558 - csv:101211617 460.685