Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00051 ATGAGGGGAATGGAGGACTTATGGGGTTTGTTCTGTGGAGGACATGACTGTTCAAGTGGTAGTGAGAAACCTTGTGGCTTTCTTTCTGATTCCCCTTCATGTAATACTCAAGCCTTGTTCATCTGTTTTGATTTTCTACTGTTGATCTTGCTTGTATCCAATATTGTGGGGAAGTCAGTGAAAAGATCTCACATGTCGAATCGAATTCGAAGTCGTTCTGCTTTGCAGATTTTGTCTGCTATCTTCAATGGTTGTGTTGGATTAGTGTACCTTGGCTTGGGAATTTGGATTCTGGTGGAGAAATTGAGTAAAGATCATACTGCTTTGCCTTTGCAGCTGTGGTTATCTGCCACCGTCCATGGCTTCACATGGTTATTGGTGAGCTCCGTTATTAGCTTCTGGTGTAAACAGTTTCCAAGAGCCTTGTTGCGCTTATTGTCCATTGCAGCATTCGTGTTTACTGGAGTTATTTGTGTTCTATCAGTTTTCGATGCTGTTTCGAACAAAACAGCATCAGCAAAGATGATTTTAGATGTTGTATCTGTTCCAGGATCAGTTCTGTTATTGATCTGCGCTTTTGGGTGTTTTTCCCGTAACGAGAGCGAGACGAGTATCAATGGGAATGGACTTTACACCCCACTAAACGGTGAGGCCAATGAAAGTGATAAGGTTGATCTTGTTACTCCATTAGCTAAAGCTGGATTGTGGAGTAAATTTTCGTTTTGGTGGATGAATCCTTTGATGAAAAAGGGGAAGGAAAAGACTCTGGACTACGACGATATACCGATGATGTGCGAAGAAGATTGTGCAGAAAGTTGCTACTTGCAGTTCACAAACAAAATGAACGAGCTGAAAAAGAAAGAACCAAATTCCCAACCATCAGTCTTAAGAGGCATCATTTTATGCCATTGGAAGGACATATTATTGTCTGGTTTTTTCGCTTTGTTGAAGATACTCTTTCTGTCTGCTGGTCCTCTGCTTCTAAATTCCTTTATCTTAGTTGCTCAGGGACATCAAAGCTTCAAATACGAAGGTCTTGTGCTTGCCCTTTCACTTTTCTTCTCGAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAAGCAGGCTTGTTGGTCTAAAAGTCAGGTCTATGCTTTCAGCAGCCATTTATAAGAAGCAATTGAGATTGTCCAACGAAGCTAAGTTGATGCACTCGAGCGGTGAAATCATGAACTATGTGACCGTGGACGCATACAGGATTGGAGAGTTTTCATATTGGTTCCACCAAACTTGGACCACGAGTCTTCAGCTCATTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATTGCCTCCTTTTTGGTAATAATTCTATGTGTAATTGGCAACACTCCAATTGCCAAGCTACTGCATAAGTATCAGAGTAAATTGATGGCTGCACAAGACGAGCGACTGAAAACGTTCACCGAGGCTCTCGTGAACATGAAGGTTTTGAAGTTATATGCTTGGGAATCCCATTTCAGGAATGTAATTTCGAAGTTAAGAGAAGTGGAGCACAAGTGGTTGTCATCTGTGCAAATTCGAAAAGGATACAATGGTATTCTCTTTTGGTCATCTCCTGTTATTGTATCTGTTGCAACCTTTGGGGCTTGTAGCCTTTTGGACATTCCGCTACATGCCAATAATGTTTTCACCTTTGTGTCTACGCTGCGCCTTGTTCAAGATCCTGTTAGATCTATGGCTGATGTCATTGCAGCGATTATTCAAGCACGGGTTTCATTTACGCGTATCGTTAACTTTCTGGAGGCACCAGAGCTGCAAGGTACAAGTGTTTGTAGAAAGCGCCTTGACACGAATGATAACTACTCCATTAAGATCAGTTCAGCATCTTTCTCATGGGAAGAGAACTCCTCGAAGCCGACTCTTCGTAATATAAATCTCGAGGTCAGATCAGGTTCGAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCATTCTCGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGCTTGCCTATGTGTCTCAAATAGCATGGATCCAAACAGGAACCATACGAGACAACATCTTATTTGGCTCTCAAATGGACAGCTGGAGGTATCGGGAAACGCTCGAGAAGTGTTCGTTGGTGAAGGACCTCGAGTTGCTTCCTTATGGTGACCTCACTGAGATTGGGGAGAGAGGAGTGAACCTCAGTGGTGGCCAAAAGCAGAGGATTCAACTCGCACGTGCGCTGTATCAAGATGCTGATATATATCTTTTGGATGATCCGTTTAGTGCTGTTGATGCACATACCGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCTCTCTCGGAGACTGCTGGTACTGAAAGGCTTGCAGATTTTTCTGCCACCAAGAGTTTGATAACATCAAGTAAAGAGATTAAGAAATCTTATACAGAGAAACTGTCCGTAACATCTGATGCTAATCAGTTAATTAAGCAGGAGGAGCGAGAAGTCGGTGACTCGGGATTCAGGCCTTATATTCAGTATCTGAATCAGAGCAAAGGGTTTATCTTCTTCTCCTTAGATGTTCTCTCCCAATTAGCATTTGTGGCATGTGGAATAATGCAAAACTCTTGGATGGCTTCGAATGTCGACAATCCCGACATCAGCAACTCCCGCTTGATCCTCGTTTACTTGTTGATTGGAATTATTTCAACATTCTTCTTGGTTACTAGATCTCTTTTCACAGCTCTTTTAGGTTTGGAATCATCAAAATCATTATTTTCTCAGCTACTAACATCTCTTTTTCGCGCACCGATGTCCTTCTATGACTCCACACCTATTGGAAGGATACTTAGTCGAGTCTCAATGGATCTTAGTATTGTAGATCTTGATGTCCCATTCAGTCTAATATTTGCTGTTGGTGCAACCTCCAATGCCTATGCTGCTCTCGGCGTTTTAGCTGTAATCACGTGGCAAGTCCTATTCATCTCCATACCGACAGTCGTTTTGGCGATTTGCTTGCAGAGATACTACTTTGCATCTGCTAAAGAACTCATGCGTCTTAACGGGACAACGAAGTCGATGGTAGCAAATCATTTGTCCGAATCCGTAGCTGGATCAATGACAATACGAGCTTTCGAAGAGGAAGAGCGATTCTTTAAGAAAAACCTTGAATTCGTCGATGGAAATGCCAGTCCATTCTTTCACAATTTTTCGGCCAACGAGTGGCTGATACAACGGTTGGAAATGCTCAGCGCGGTCGTCCTTGCCTCCGCTGCATTGTGCATGGTGTTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCAATCTCTTATGGCCTTTCTTTAAATGTGTCCTTGGTCTTCTCCATCCAGAATCAATGTACTATAGCTAATCACATCATTTCTGTGGAAAGATTAAACCAATACATGCACTTACCGAGCGAAGCTCCGGAGATCATCGAAGAGAGACGTCCCCCAACCAACTGGCCCTCTGTCGGCAAAGTCGAGATAATTGACTTGAAGATACGATACCGACCCAATACACCCCTTGTTCTTCATGGTATAAGCTGCACATTTGAAGGAGGACATAAGATTGGCATTGTTGGGCGGACTGGCAGTGGAAAGTCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGAAAAATTTTAGTTGATGGTATCGACATCTGCTCGATCGGACTTCATGACCTGCGGTCACGTTTCGGGATTATACCTCAAGATCCAACCCTTTTTAAAGGGACTGTTAGATACAATTTGGATCCTTTAGTTCAGCATACTGATGATGAAATATGGGAGGTACTTGGAAAGTGTCAACTTAGAGAGGCTGTTGAAGAGAAAGAAGCCGGTTTGGATTCCATGGTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAGCGCCAACTTTTCTGTTTAGGCCGTGCGCTGTTGAGAAGAAGTAGAATATTGGTGCTCGATGAGGCAACTGCGTCGATCGACAATGCAACGGATATGATTCTGCAGAAGACGATTCGAACTGAATTCGCAGACTGTACGGTGATTACAGTTGCACACAGAATACCAACTGTTATGGACTGCACCATGGTGCTTGCTATAAGTGACGGGAGAATAGCAGAGTACGACGAACCGACCACGTTGATCAAGAGAGAAGGCTCTCTATTCGGGCAGCTCGTGAAAGAATATTGGTCTCACTCACCATCTGCAGAATGA 4275 43.27 MRGMEDLWGLFCGGHDCSSGSEKPCGFLSDSPSCNTQALFICFDFLLLILLVSNIVGKSVKRSHMSNRIRSRSALQILSAIFNGCVGLVYLGLGIWILVEKLSKDHTALPLQLWLSATVHGFTWLLVSSVISFWCKQFPRALLRLLSIAAFVFTGVICVLSVFDAVSNKTASAKMILDVVSVPGSVLLLICAFGCFSRNESETSINGNGLYTPLNGEANESDKVDLVTPLAKAGLWSKFSFWWMNPLMKKGKEKTLDYDDIPMMCEEDCAESCYLQFTNKMNELKKKEPNSQPSVLRGIILCHWKDILLSGFFALLKILFLSAGPLLLNSFILVAQGHQSFKYEGLVLALSLFFSKSIESISQRQWYFRSRLVGLKVRSMLSAAIYKKQLRLSNEAKLMHSSGEIMNYVTVDAYRIGEFSYWFHQTWTTSLQLIIALLILYKAVGIATIASFLVIILCVIGNTPIAKLLHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWESHFRNVISKLREVEHKWLSSVQIRKGYNGILFWSSPVIVSVATFGACSLLDIPLHANNVFTFVSTLRLVQDPVRSMADVIAAIIQARVSFTRIVNFLEAPELQGTSVCRKRLDTNDNYSIKISSASFSWEENSSKPTLRNINLEVRSGSKVAICGEVGSGKSTLLAAILGEIPNVEGNIQVYGRLAYVSQIAWIQTGTIRDNILFGSQMDSWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNGYVMEALSETAGTERLADFSATKSLITSSKEIKKSYTEKLSVTSDANQLIKQEEREVGDSGFRPYIQYLNQSKGFIFFSLDVLSQLAFVACGIMQNSWMASNVDNPDISNSRLILVYLLIGIISTFFLVTRSLFTALLGLESSKSLFSQLLTSLFRAPMSFYDSTPIGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTVVLAICLQRYYFASAKELMRLNGTTKSMVANHLSESVAGSMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAALCMVLLPTGSFSPGFIGMAISYGLSLNVSLVFSIQNQCTIANHIISVERLNQYMHLPSEAPEIIEERRPPTNWPSVGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHTDDEIWEVLGKCQLREAVEEKEAGLDSMVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAE 1424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 309560 316168 + Cp4.1LG09g00520.1 Cpe09g00051 474417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00051 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 788 IPR027417 -
Cpe09g00051 1424 SMART AAA_5 1206 1398 IPR003593 -
Cpe09g00051 1424 SMART AAA_5 650 940 IPR003593 -
Cpe09g00051 1424 Gene3D - 1163 1415 IPR027417 -
Cpe09g00051 1424 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Cpe09g00051 1424 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Cpe09g00051 1424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 858 IPR003439 GO:0005524
Cpe09g00051 1424 Gene3D ABC transporter type 1, transmembrane domain 276 602 IPR036640 GO:0005524|GO:0016021
Cpe09g00051 1424 Gene3D ABC transporter type 1, transmembrane domain 829 1161 IPR036640 GO:0005524|GO:0016021
Cpe09g00051 1424 CDD ABCC_MRP_domain1 623 788 - -
Cpe09g00051 1424 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 797 - -
Cpe09g00051 1424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1180 1414 IPR003439 GO:0005524
Cpe09g00051 1424 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 794 1424 - -
Cpe09g00051 1424 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Cpe09g00051 1424 SUPERFAMILY ABC transporter transmembrane region 872 1160 IPR036640 GO:0005524|GO:0016021
Cpe09g00051 1424 CDD ABCC_MRP_domain2 1178 1398 - -
Cpe09g00051 1424 SUPERFAMILY ABC transporter transmembrane region 296 601 IPR036640 GO:0005524|GO:0016021
Cpe09g00051 1424 Pfam ABC transporter transmembrane region 308 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00051 1424 Pfam ABC transporter transmembrane region 864 1123 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00051 1424 Pfam ABC transporter 1197 1345 IPR003439 GO:0005524
Cpe09g00051 1424 Gene3D - 603 817 IPR027417 -
Cpe09g00051 1424 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 901 1143 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00051 1424 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 69 797 - -
Cpe09g00051 1424 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 794 1424 - -
Cpe09g00051 1424 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g00051 1424 CDD ABC_6TM_ABCC_D2 862 1155 IPR044726 GO:0140359
Cpe09g00051 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1171 1407 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00051 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2364.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00051 Cpe14g00066 CCT
Cpe09g00051 Cpe14g00066 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00051 Cpe-Chr9:309560 Cpe03g01643 Cpe-Chr3:12582250 5.75E-10 dispersed
Cpe08g00693 Cpe-Chr8:5343244 Cpe09g00051 Cpe-Chr9:309560 5.59E-08 transposed
Cpe14g00066 Cpe-Chr14:368740 Cpe09g00051 Cpe-Chr9:309560 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00051 Cpe_Chr09 FPKM 10.469775 10.996026 5.296425 3.78875 8.038133 8.86267 8.684775 1.873616 1.950616 1.825928