Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00052 ATGTCTCAGGTGGTGGCTACGAGGTCGATTCACAGTACAGTCCCGTGCCATGGCTCGGGATCTGTGCTGGACCGGGTGAACAGAGCTCGGTCTTTTGGTATTGGTTCCAAAGTGTTGACGCATGAGAAGAAGAGAAGGAATTTTGTTTGCAGGAGAACTCTAATCACAGCCAAGAGAGCTGCTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATATTCAGAAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAACTCGGTGATACACCGGTCGGAATGTGGTCCAAACCAACAGTTAGACGTAAGACAAAAATCGTGTGCACAATTGGACCTTCAACTAACACGAAGGAAATGATTTGGAAGCTGGCTGAGGCTGGAATGAACGTTGCCCGATTGAATATGTCTCATGGAGACCATGCATCTCATCAGAAAGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAGGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTGCAGACTCTGTTAGCGTGAACTATGATGATTTTGTTAATGATGTAGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGTTCATGGTGAAGTCTAAGACAGAGGATTCTGTTAAGTGTGAAGTTATTGATGGTGGAGAGCTCAAGTCCAGGCGACATTTAAATGTTCGAGGGAAAAGTGCAACACTGCCTTCCATTACTGAGAAGGACTGGGATGACATAAAATTTGGAGTTGACAACAAAGTTGACTTTTATGCTGTCTCGTTTGTTAAAGATGCACAAGTAGTTCATGAGTTGAAAAAATATCTTAAAAGCTGTGATGCTGATATTCATGTCATTGTAAAAATAGAAAGTGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCAAGAGGCGATCTTGGTGCAGAACTCCCTATTGAAGAAGTTCCACTTCTGCAGGAGGAGATAATCAACTTGTGTCGAGGCATGGGGAAGGCTGTCATTGTTGCAACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGAGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGGGCCGATGCAATCATGCTCTCTGGAGAAACAGCTCATGGAAAATTCCCATTAAAAGCTGTGAAAGTAATGCATACAGTTGCTTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTGAATCTCGGTCAAACATTCAAGAACCATATGAGTGAGATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAAAACTGGTTTCATGGCCATCCTTCTAAGCCACTACCGACCATCTGGGACAACATTTGCTTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTATATCAGGGAAGGCAAGGAATGGTAAAGGAAGGAGAAGAGGTGGCACTCCTTCAGAGTGGCAGACAACCCATATGGCGGTTCCCATCTACTCACAATATTCAAGTCCGTAAAGTGTAG 1578 43.54 MSQVVATRSIHSTVPCHGSGSVLDRVNRARSFGIGSKVLTHEKKRRNFVCRRTLITAKRAAQAEVVPVSPEDIQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMLLVDGGMMSFMVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTKTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGRQGMVKEGEEVALLQSGRQPIWRFPSTHNIQVRKV 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 316510 321550 - Cp4.1LG09g00630.1 Cpe09g00052 474418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00052 525 ProSitePatterns Pyruvate kinase active site signature. 290 302 IPR018209 GO:0004743|GO:0006096
Cpe09g00052 525 PANTHER PLASTIDIAL PYRUVATE KINASE 2 34 147 - -
Cpe09g00052 525 PANTHER PYRUVATE KINASE 34 147 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PANTHER PLASTIDIAL PYRUVATE KINASE 2 147 490 - -
Cpe09g00052 525 TIGRFAM pyruv_kin: pyruvate kinase 147 497 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 414 IPR015813 GO:0003824
Cpe09g00052 525 Pfam Pyruvate kinase, alpha/beta domain 437 493 IPR015795 -
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 138 154 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 388 404 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 369 387 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 262 276 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 292 318 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 319 343 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PRINTS Pyruvate kinase family signature 344 368 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 Gene3D - 147 407 IPR040442 -
Cpe09g00052 525 Pfam Pyruvate kinase, barrel domain 146 415 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 SUPERFAMILY PK C-terminal domain-like 398 506 IPR036918 -
Cpe09g00052 525 SUPERFAMILY PK beta-barrel domain-like 149 240 IPR011037 -
Cpe09g00052 525 Gene3D - 150 243 IPR015806 GO:0004743|GO:0006096
Cpe09g00052 525 PANTHER PLASTIDIAL PYRUVATE KINASE 2 492 525 - -
Cpe09g00052 525 Gene3D - 104 146 IPR040442 -
Cpe09g00052 525 PANTHER PYRUVATE KINASE 147 490 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 PANTHER PYRUVATE KINASE 492 525 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe09g00052 525 Gene3D - 424 506 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00052 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 950.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00052 Cpe14g00069 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00052 Cpe-Chr9:316510 Cpe15g00346 Cpe-Chr15:4647442 0 dispersed
Cpe14g00069 Cpe-Chr14:379996 Cpe09g00052 Cpe-Chr9:316510 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00052 Cpe_Chr09 FPKM 8.720304 8.165606 10.045584 11.101894 7.711744 6.36629 8.222996 8.128098 7.497237 8.242572