Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00053 ATGGCTGTAGGTGCTTCTTCGTCGTCTCGCGATGGCTCGTGGGTTATGTTCGCTTTGGCTGTTGTATGGCTGATTCGGGCTTGCATGGCTAGCCAAATTGTTATTGGAGCGAGGTTGGTTGCTGGTGATCGTGAGAGAAACGCTTGGGTTTCTGATAATAGTACTTTTGCGTTCGGGTTTAGTCCGGCTAGTAGTGGCGCGGTTGATCGATTTCTACTTGCCATATGGTTCGCCAAGCTTCCCGGGGATCGAACCGTGGTTTGGTCAGCTAACAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGTTTGATGCCACCGGAAACCTCGTCCTTTTGGACGGTGGCGCCACCGTCTGGTCTTCCAACACCTCCGGAGACGGAGCGGAGTTCGCCGTCATGTCAGAATCTGGCAACTTCATCCTCTTCAACGCCGAGCGAATCCCTATTTGGCAAAGCTTTTCACACCCATCTGATACGCTTCTCCCAAATCAACCTCTATCAGTGTCTTTAGAGCTTACAACTTCAAAATCCCTCTCCCATGGCGGATATTATGCCCTTAAAATGCTCCAACAACGCACCACTCTCAAACTCGCCTTGACATTCAATTTGCCTGAAAATTATGCGGGGTTGCCTGAATCTTACTCAAATTACTCCTATTGGTCCGCCCCTGCCATTTCCAATGTAACAGGGGAAGTCATCGCTGTTCTAGACGAAGGCGGAAGCTTCGGTGTGGTCTATGGCGACTCCTCTAATGGCGCTGTGTATGTTTACAAGAACGATAACGACAATGGGGGATTGTCGGCGTCGACAAATCAGTCGATTCGCAATGTACGCACGCAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGACGATGATGTTAATGGGTCTCGCCAATGGGTGCCGGAATGGGCGGCGGTTTCAAATCCTTGTGATATTGCCGGAATCTGTGGAAATGGGATTTGCTATCTGGATAGAAGTAAGACGAATGCGACTTGTTCTTGCTTGCCGGGGACTTTTAAGGACGCCGGCGGTAGCCAGTGCTTTGAGAATTCATCGTCGGTGGGTAAATGTGACGGCCAACATCATCAATCTCCGGCGACCCAGTTCAGGATTTCTCCAGTTCAGCAAACAAATTACTATTACTCTGAGTTCTCTGTTATTGCAAATTACAGTGATATCGACACTGTTGCCAAATGTGGCGATGCTTGCTTGTCTAATTGTGAGTGTGTTGCCTCTGTTTATGGGCTTGATGAAGAGAAACCTTATTGTTGGGTGTTGAGAAGCTTAGATTTTGGGGGGTTTGAGGATGCTGGTTCGACTCTGTTTGTGAAGGTTAGGTCCAATGGGTCAATACCAGATGCCAATGGGCCAAGAACTGATGGAGATTCTTCAGGAAGTGCTAAACAAAAGGCTACGATTATTCCTATTGTTTTGAGTATGGCTTTTCTGATTGGGTTGCTGTGTTTGTTGTTATATTATAATGTTCATAGAAGAAAGGTTTTAAAGAGAGCCATGGAGAGCTCTCTGATCTTGTCTGGAGCTCCTATGAGCTTCACACACCGCGATTTGCAGATCCGGACGAACAATTTCTCCGAGCTTCTTGGAACAGGTGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTGGTAGCTGTGAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAACACTATTGGATCTATGCATCACATGAACCTGGTTCGCCTCTGCGGATACTGCTCGGAAGGGTCGCATAGGCTTCTGGTGTATGAATTCATGAAAAATGGGTCTGTGGACAAATGGATATTTCCTTCACATCATAACCAAGACAGGATTTTAGATTGGTCGACTCGGTTTCACGAGATGAAGAATGGAACTCATTTCAAAGTGGCAGATAGGCGGCTAGAGGGTGCAGTGGATGGAGAAGAGCTAATGAGAGCATTGAAAGTTGCATTTTGGTGCATACAAGATGAAGTTGTCATGCGACCGACGATGGGCGAGATCGTGAGAATGTTGGAAGGATCGAGTGAGGTTGAGACGCCGCCAATGCCACAAACAGTGGTGGAGATGATTGAGGAAGGCTTGGATCAAGTTTATAGAGCCATGAAAAGAGATATCAATCAGTCAAGTTCCTTCACCATTAATACCCAACCTTCTTCATCTTTGGCTACCTGCAGCCATTCCACAATCTCTCCAAGATAG 2265 46.8 MAVGASSSSRDGSWVMFALAVVWLIRACMASQIVIGARLVAGDRERNAWVSDNSTFAFGFSPASSGAVDRFLLAIWFAKLPGDRTVVWSANRNSPVSKNAIVEFDATGNLVLLDGGATVWSSNTSGDGAEFAVMSESGNFILFNAERIPIWQSFSHPSDTLLPNQPLSVSLELTTSKSLSHGGYYALKMLQQRTTLKLALTFNLPENYAGLPESYSNYSYWSAPAISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDRSKTNATCSCLPGTFKDAGGSQCFENSSSVGKCDGQHHQSPATQFRISPVQQTNYYYSEFSVIANYSDIDTVAKCGDACLSNCECVASVYGLDEEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPDANGPRTDGDSSGSAKQKATIIPIVLSMAFLIGLLCLLLYYNVHRRKVLKRAMESSLILSGAPMSFTHRDLQIRTNNFSELLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSVDKWIFPSHHNQDRILDWSTRFHEMKNGTHFKVADRRLEGAVDGEELMRALKVAFWCIQDEVVMRPTMGEIVRMLEGSSEVETPPMPQTVVEMIEEGLDQVYRAMKRDINQSSSFTINTQPSSSLATCSHSTISPR 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 323089 327382 - Cp4.1LG09g00610.1 Cpe09g00053 474419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00053 754 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 640 754 - -
Cpe09g00053 754 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 17 641 - -
Cpe09g00053 754 PIRSF SRK 10 646 IPR024171 GO:0004674
Cpe09g00053 754 PIRSF SRK 640 742 IPR024171 GO:0004674
Cpe09g00053 754 PANTHER OS07G0415500 PROTEIN 640 754 - -
Cpe09g00053 754 PANTHER OS07G0415500 PROTEIN 17 641 - -
Cpe09g00053 754 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Cpe09g00053 754 SUPERFAMILY Protein kinase-like (PK-like) 518 642 IPR011009 -
Cpe09g00053 754 Pfam D-mannose binding lectin 85 175 IPR001480 -
Cpe09g00053 754 SMART blect_4 38 157 IPR001480 -
Cpe09g00053 754 Pfam S-locus glycoprotein domain 273 347 IPR000858 GO:0048544
Cpe09g00053 754 Gene3D Transferase(Phosphotransferase) domain 1 614 712 - -
Cpe09g00053 754 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Cpe09g00053 754 ProSiteProfiles Protein kinase domain profile. 538 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00053 754 MobiDBLite consensus disorder prediction 731 754 - -
Cpe09g00053 754 Gene3D - 29 156 IPR036426 -
Cpe09g00053 754 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 159 IPR036426 -
Cpe09g00053 754 CDD B_lectin 50 157 IPR001480 -
Cpe09g00053 754 Gene3D Phosphorylase Kinase; domain 1 503 613 - -
Cpe09g00053 754 Pfam Protein tyrosine and serine/threonine kinase 540 624 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00053 - - - bhj:120087538 1140.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00407 Cpe-Chr2:2270025 Cpe09g00053 Cpe-Chr9:323089 1.35E-21 dispersed
Cpe06g00340 Cpe-Chr6:1884864 Cpe09g00053 Cpe-Chr9:323089 4.95E-35 dispersed
Cpe07g00298 Cpe-Chr7:1941951 Cpe09g00053 Cpe-Chr9:323089 6.54E-09 dispersed
Cpe09g00053 Cpe-Chr9:323089 Cpe18g00145 Cpe-Chr18:3001923 2.14E-61 dispersed
Cpe09g00053 Cpe-Chr9:323089 Cpe03g00091 Cpe-Chr3:472686 1.08E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g820 . . . . . . . . . . . . . . . . . Bhi01g01429 . . . . . . . . . . . . . . . . . Lsi05g01175 . . . . . . . . . . . . . . . . . . Cpe09g00053 . . . . . . . . . . . . . . . . . Chy06g01280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62580 PF07714 PK_Tyr_Ser-Thr 2.30E-13 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00053 Cpe_Chr09 FPKM 17.325607 16.073524 2.651754 2.689448 2.626705 2.93721 2.828857 3.036976 2.907922 2.630642