Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00057 CATCCTTCTCAAATTCTCGCCATTGTCGGCCCAAGCGGCGCCGGAAAATCCACCCTTCTTGATATCCTCGCCGCTCGAACCACCCCGACTCATGGCGCCGTTCTTCTCAACTCCTCCACTCTGAACCTTTCCACTTTCCGCAAACTCTCCACCTACGTTCCTCAACACGACGCCTGTCTCCCTCTCTTAACCGTCTCCGAAACATTCGCCTTCGCCGCCCGCCTTCTCCTCCCTAGTAAATCCCAAATCCAGGCCACTGTCGACTCCCTTCTCGCCGACCTCCGCCTCACCCACGTCGCCAACACCCGCCTTATCTCCGGCCTCTCCGGCGGCGAACGACGGCGCGTCTCAATCGGCCTCAGCCTCCTCCACGACCCCGCCGTTTTACTCCTCGACGAACCCACCTCCGGCCTCGACAGCGCCTCCGCCTTCAATGTAATATCGACCCTTAAATCCATCTGTTTGGCCCGTTATCGGACGGTGGTGCTTTCGATTCACCAGCCGAGCTTCCGGATTTTGTCGGCCATTGATAGGATTCTTTTGCTCTGTAAAGGGTGTGTGATTCATCATGGGACTCTTTCGACTCTTGAGAGTTTTTTGGTTTCGAAGGAATTTTCAATTCCTCCGCAGCTTAATCCATTGGAATTCGCCATGGAAATTCTGAACCAGCTTACCCCTTCTTCTAATTCTAGTTCGATTCCTTCCTCTGATTCCGCCATTGTCGCGCGCTCCAACGATGAAGATGATCAAATCAAATACAGGAGCTCCAGATTACATGAAATCTTCACCCTCCATTGGAGATTTTGGGTCATCATTTTCAGGACGAGGCAGCTGCTTTTTACCAACACTTTGGAGGCCCTCATTGTTGGAATTGTTTTAGGGACAATTTACATAAACATCGGAATGGATAAGGCAGGCATAGAGAAAAGATTCGGTCTATTCGCGTTCACACTAACATTCCTGCTCTCATCCACCACCGAAGCACTCCCAATCTTCCTGAACGAACGCCCCATCCTCCTCCGCGAAACCTCCGGCGGCGTCTACCGGCTCTCCTCCTACATAATCGCCAACACCCTCGTGTTCCTCCCCTACCTCCTCGCCATCGCCGTGATCTACTCCGTCTCCGTCTACTTCCTGGTGGGGCTGTGCGCCACGTGGCAAGCCTTCGCATACTTCGTCCTCGTCGTCTGGGTCATCATTCTGATGGGCAACTCATTCGTGCTCTTCCTCAGCTCCCTGGCTCCGAACTTCATCGCCGGCTCGTCGCTGGTGACGGTTCTGCTGGCCGGGTTTTTCCTCTTCAGCGGGTACTTCATTTCTGAGGAGAGCATGCCCAGGATGTGGGTGTTCATGCACTTGTTGTCCATGTACAAGTACGCGCTGGACGCGCTGCTGATAAACGAGTACACGTGTCTGGTCTCTCGGTGCTTTGTTTGGTTGGAGGAGCGGGAGGAGTGTTTGGTTACGGGGGGAGATGTGTTGGAGAAGAGAGGGCTGGACGAGACGCAGCGGTGGAGGAATGTTTATGCTTTGGTGGGGTTTGTTGTGTTCTATCGTCTTCTTTGTTTGGTTGTTTTGATTAGAAGGGTTTCCAGGTCTAACAAA 1605 53.21 HPSQILAIVGPSGAGKSTLLDILAARTTPTHGAVLLNSSTLNLSTFRKLSTYVPQHDACLPLLTVSETFAFAARLLLPSKSQIQATVDSLLADLRLTHVANTRLISGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSASAFNVISTLKSICLARYRTVVLSIHQPSFRILSAIDRILLLCKGCVIHHGTLSTLESFLVSKEFSIPPQLNPLEFAMEILNQLTPSSNSSSIPSSDSAIVARSNDEDDQIKYRSSRLHEIFTLHWRFWVIIFRTRQLLFTNTLEALIVGIVLGTIYINIGMDKAGIEKRFGLFAFTLTFLLSSTTEALPIFLNERPILLRETSGGVYRLSSYIIANTLVFLPYLLAIAVIYSVSVYFLVGLCATWQAFAYFVLVVWVIILMGNSFVLFLSSLAPNFIAGSSLVTVLLAGFFLFSGYFISEESMPRMWVFMHLLSMYKYALDALLINEYTCLVSRCFVWLEEREECLVTGGDVLEKRGLDETQRWRNVYALVGFVVFYRLLCLVVLIRRVSRSNK 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 350056 351727 + Cp4.1LG09g00500.1 Cpe09g00057 474423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00057 535 Pfam ABC transporter 2 136 IPR003439 GO:0005524
Cpe09g00057 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 196 IPR027417 -
Cpe09g00057 535 Pfam ABC-2 type transporter 260 469 IPR013525 GO:0016020|GO:0140359
Cpe09g00057 535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 209 IPR003439 GO:0005524
Cpe09g00057 535 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 1 530 - -
Cpe09g00057 535 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 530 - -
Cpe09g00057 535 Gene3D - 1 205 IPR027417 -
Cpe09g00057 535 Pfam ABC-2 type transporter 166 232 IPR043926 GO:0140359
Cpe09g00057 535 ProSitePatterns ABC transporters family signature. 108 122 IPR017871 GO:0005524
Cpe09g00057 535 SMART AAA_5 2 194 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00057 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101208704 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00057 Cpe14g00074 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00057 Cpe-Chr9:350056 Cpe16g00857 Cpe-Chr16:8154997 9.91E-176 dispersed
Cpe14g00074 Cpe-Chr14:407677 Cpe09g00057 Cpe-Chr9:350056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g798 . . Bda05g00099 . Bpe03g00256 . . . Cmo16g00094 Cmo18g01312 . . . . . . Cpe14g00074 Bhi01g01422 . . . Hepe07g0110 Mch10g0112 . . . . . . . . . . Cone14ag0047 Cone15ag0051 Lsi05g01179 . . . Blo07g00359 . . . . . . . . . . Cma16g00090 Cma18g01281 Car16g00080 . Cpe09g00057 . . . . . . . . Cla05g00929 Cam05g1016 Cec05g1020 Cco05g1016 Clacu05g1005 Cmu05g0958 Cre05g1039 . Csa03g01761 Chy06g00989 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010883 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00057 Cpe_Chr09 FPKM 4.670654 5.469325 20.675943 20.667416 6.431036 6.689772 7.123154 17.468025 17.69471 17.512648