Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00058 ATGGCGTCCGATCTCGAAGCCAGGGCTAAGGAGGCGTTTATCGATGACCATTTCGAACTTTCCGTCGAGCTCTACACTCAGGCCATCGCTCTTAGTCCCAAGAAAGCCGAGCTTTACATTGACCGCGCTCAGGCCAACATCAAACTCGGCCATTACACTGAGGCTGTCGCTGATGCTAACAAAGCAATTGAACTTGACCCTTCAAATTCAAAAGCATACTTGCGCAAAGGCACTGCGTGTCTGAAGCTCGAGGAATATCAAACAGCGAAGGTTGCCTTGGAGACAGGTTCTGCTATGGCCTCAGGAGATTCAAGATTCTCAAGTTTAATAAAAGAATGTGAAAAACTCATTGCCGAGGAAATGGGCGATCTTCCGCAGGAATCTGTTGAAGAAACTGTTCAGGAACCTGTTTTACCAACAAATAATGTTGTACATGTGAGTGATCAATTGCATCAGGCAACAGTTGAAGCCAAACCGAAATTCAGGCACGAATTTTATCAGAAGCCAGAAGAAGTGGTCGTGACCATATTTGCAAAGGGCATACCAGCTGAAAATGTTGCTGTTGAATTTGGTGAACAAATTTTGAGTGTTACTATCAATCTTCCTGGTGAAGATACATATCGTTTCCAGACTCGTTTATTTGGGAAGATAATACGCGAGAAGTGCAAATTTTTGGTTTTATCTACGAAAATTGAAATTCGTCTAGCAAAGGCTGAGCTAATAACCTGGACGAGTCTTGAATTCAAAAAGGATAATAGAATTACCCAGAGCATTAGTGTCCCCGCTAGTGGATCTCAGAGGCCTTCTTACCCCTCCTCTAAGCCCAAAAGAGATTGGGATAAAATTGAAGCTGAAGTGAAAAAGGAGGAGAAAGACGAAAAACTAGACGGGGATGCAGCTTTGAACAAGTTTTTCCGAGACATATACAAGGACGCCGACGAGGATACGAGAAGGGCCATGCAAAAATCATTTGTGGAGTCGAATGGCACGGTCCTGTCCACGAACTGGAAGGAGGTCGGGACGAAGAAGGTGGAAGGTAGCCCTCCAGATGGTATGGAGTTGAAGAAATGGGAGATCTGA 1080 44.63 MASDLEARAKEAFIDDHFELSVELYTQAIALSPKKAELYIDRAQANIKLGHYTEAVADANKAIELDPSNSKAYLRKGTACLKLEEYQTAKVALETGSAMASGDSRFSSLIKECEKLIAEEMGDLPQESVEETVQEPVLPTNNVVHVSDQLHQATVEAKPKFRHEFYQKPEEVVVTIFAKGIPAENVAVEFGEQILSVTINLPGEDTYRFQTRLFGKIIREKCKFLVLSTKIEIRLAKAELITWTSLEFKKDNRITQSISVPASGSQRPSYPSSKPKRDWDKIEAEVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEI 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 352022 355012 - Cp4.1LG09g00620.1 Cpe09g00058 474424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00058 359 Pfam CS domain 162 237 IPR007052 -
Cpe09g00058 359 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
Cpe09g00058 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Cpe09g00058 359 ProSiteProfiles SGS domain profile. 269 359 IPR007699 -
Cpe09g00058 359 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Cpe09g00058 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Cpe09g00058 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Cpe09g00058 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Cpe09g00058 359 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Cpe09g00058 359 Pfam Tetratricopeptide repeat 36 69 IPR013105 -
Cpe09g00058 359 Pfam SGS domain 277 357 IPR007699 -
Cpe09g00058 359 Gene3D - 153 260 IPR008978 -
Cpe09g00058 359 CDD p23_CS_SGT1_like 164 247 - -
Cpe09g00058 359 SUPERFAMILY TPR-like 4 114 IPR011990 GO:0005515
Cpe09g00058 359 ProSiteProfiles TPR repeat region circular profile. 36 69 - -
Cpe09g00058 359 SUPERFAMILY HSP20-like chaperones 152 251 IPR008978 -
Cpe09g00058 359 MobiDBLite consensus disorder prediction 260 279 - -
Cpe09g00058 359 PANTHER PHOSPHATASE-RELATED 1 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00058 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - csv:101208950 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00058 Cpe14g00075 CCT
Cpe09g00058 Cpe14g00075 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00058 Cpe-Chr9:352022 Cpe04g00838 Cpe-Chr4:7791827 2.65E-15 dispersed
Cpe09g00758 Cpe-Chr9:7056623 Cpe09g00058 Cpe-Chr9:352022 5.29E-06 dispersed
Cpe14g00075 Cpe-Chr14:410557 Cpe09g00058 Cpe-Chr9:352022 3.04E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00058 Cpe_Chr09 FPKM 22.185633 27.174475 24.723269 20.859663 40.326927 32.033028 46.35043 24.956562 27.562046 33.763535