Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00070 ATGAACAAAATGGGAAAGTGGAAAGGTTGTGGAAAACTAGGACGACTGGTGCCAAGAGGTGGTTCTATGACTTCTTACAAATATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTCAGGAAAATGAGTATGGGCAATAAAGGACAGCCTGTCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGGCGGTTAGAAAAAGCGCTTGCGACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCCTGATTGGTGAAGACTCAGATGACTCGTACAAGATTCTTCTAGAAAACGACGGTCTCAACCCTTGGGACTGCCCTGGGCAGTTTGACCACGTAATGAGTGTTTCAAGACCAGACATTCCAGTGCAGGAGTTTGGGAGATGTACGACCCTTGATGGGACTGGTTGGACTTCTAACATCGATAGATTTGGATCAATGTGGCATGGTTTTGGGAGCGATTATTGGTCGGTCTCTGCTGGACATTATGCTGAAGATCACCGTGCATTATGTTTCAAGCAAGTTGATGGAGCTGTAAGTGAGATTTCTGCTGGCATTATAGCGGCGCAGGCTGTCTCATCACTTCATATTACGGTAGATGGGGATGAAGAATTCAACGCCCTTAACAGGAAGCGAAGGGGTATGTAA 774 44.7 MNKMGKWKGCGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMSMGNKGQPVVKKAKKKQVKDELDRQKQAEKKKRRLEKALATSAAIISELEKKKQMKKEEQQRLDEEGAAIAEAVALHVLIGEDSDDSYKILLENDGLNPWDCPGQFDHVMSVSRPDIPVQEFGRCTTLDGTGWTSNIDRFGSMWHGFGSDYWSVSAGHYAEDHRALCFKQVDGAVSEISAGIIAAQAVSSLHITVDGDEEFNALNRKRRGM 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 415691 419084 + Cp4.1LG09g00690.1 Cpe09g00070 474436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00070 257 PANTHER OS02G0104200 PROTEIN 44 253 - -
Cpe09g00070 257 MobiDBLite consensus disorder prediction 59 82 - -
Cpe09g00070 257 Coils Coil 57 115 - -
Cpe09g00070 257 MobiDBLite consensus disorder prediction 52 82 - -
Cpe09g00070 257 PANTHER OS02G0104200 PROTEIN 44 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00070 - - - cmax:111467587 403.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00070 Cpe14g00088 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00088 Cpe-Chr14:475737 Cpe09g00070 Cpe-Chr9:415691 3.35E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g752 . . . Bda07g01900 Bpe03g00151 . Bma10g01246 Bma14g02046 Cmo16g00109 Cmo18g01297 . . . . . . Cpe14g00088 . . . . . . . . . . . . . . . . Cone14ag0060 . Lsi05g01198 . . . . . . . . . . . . . . Cma16g00102 Cma18g01267 . Car18g01176 Cpe09g00070 . . . . . . . . Cla05g00909 Cam05g0995 Cec05g0998 Cco05g0996 Clacu05g0983 Cmu05g0939 Cre05g1023 . Csa03g01743 Chy06g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003943 1 0 0 2 2 1 2 1 1 1 1 1 2 1 2 2 1 0 2 1 1 1 1 1 2 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00070 Cpe_Chr09 FPKM 1.334951 1.587459 3.059017 2.13324 7.706382 7.377894 9.446854 0.917391 1.046639 0.675163