Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00073 ATGGTAGTTTCTCTAAGACTACCTTCGCTCTCCTCTTTGCTTTCCCCAGCCTCTCCTTTCACTTTTTCCAGGCGAGCTCTGGGAATTTCATGGCGGCAGCAACGCCCTTTCCGGTTGCCTCTGCTTGCTCCTGGATTCTCGGTGCGAAGCTCGTCTACCGGGACCGAAATTCATGTCGACAACTCGAAGAATCGAGTTCCGGAAGGGGCTATCACGCCTCGGTCACAGGACTTCAATGCTTGGTATTTGGATATTATTGCTAACGCTGAGCTCGCGGATTATGGCCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGTTACGCCATATGGGAAGCAATACAGGAATATCTGAATGTTAAGTTCAAGGAGACTGGTCACGAGAATATGTACTTTCCGCAGTTTATACCATACTCATTCATTGAGAAGGAAGCGAGTCATGTCGAGGGGTTTAGTCCGGAGTTAGCTCTTGTAACCATTGGAGGAGGGAAAGAACTTGAAGAGAAGCTTGTGGTTCGACCTACGAGTGAAACTATTGTGAATCACATGTTTACACAGTGGATTCATAGTCACCGTGATCTTCCCTTGATGATTAATCAGTGGGCGAATGTTACTAGATGGGAGATGCGGACGAAGCCCTTTGTAAGAACTCTTGAATTTCTGTGGCAGGAGGGTCATACTGCTCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGACATATATACAAAATTTGCTTACGAGCAAGCGGCAATACCTGTTATTGCAGGTCGAAAATCAAAGGTGGAGACATTTGCTGGTGCAGACAAGACTTATACAATAGAGGCCATGATGGGGGATCGAAAAGCACTTCAGGCAGGAACCAGCCACAACCTTGGGCAAAACTTTTCTCGTGCTTTTGGAACACAGGTGGTAATCATACCAATCTGGAAGAAAGAAGGTGTTAAAGCAGAAGTTCTTAATGCTGCTGCTTCTGTAGAAGTAAATCTTCGAACGGCAGGAATAAAGGTTAAACTCGATAATTCTGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGCGTTCCTTTGAGGATTGAGATTGGTCCCAAGGATGTTGCAAATCAAAGTGTGGTTATTTCTAGGAGAGATATTCCTGGAAAGCAAGGGAAAGTTTTTGGGATATCCATGGAACCTTCTATTTTAGAAGCTTATGTGAAAGACACGTTGGATGAAATCCAATCATCTCTTCTGGAACAAGCAAAAACTTTTCGTGACAGTAACGTTGTGGATGTGAGTTCATATAATGAACTTAAAGAGGCGATCTCCCAGGGAAAATGGGCTAGGGGCCCTTGGTCAGCTAGTGACAAAGATGAGTTGAAAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCTTTTGAACAGCCACAGGGACCTAAAACATGCTTGATGACCGGTAACGCTGCGGAGGAAGTTGCCATTTTTGCGAAGTCTTATTGA 1509 44.73 MVVSLRLPSLSSLLSPASPFTFSRRALGISWRQQRPFRLPLLAPGFSVRSSSTGTEIHVDNSKNRVPEGAITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHENMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSHRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEAIQMIDIYTKFAYEQAAIPVIAGRKSKVETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQVVIIPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDNSEQRTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVKDTLDEIQSSLLEQAKTFRDSNVVDVSSYNELKEAISQGKWARGPWSASDKDELKVKEETGATIRCFPFEQPQGPKTCLMTGNAAEEVAIFAKSY 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 429059 434241 - Cp4.1LG09g00770.1 Cpe09g00073 474439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00073 502 CDD ProRS_anticodon_zinc 307 502 - -
Cpe09g00073 502 PANTHER BNAC09G28510D PROTEIN 307 502 - -
Cpe09g00073 502 Hamap Proline--tRNA ligase [proS]. 71 502 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 Gene3D - 431 502 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 Pfam Prolyl-tRNA synthetase, C-terminal 436 502 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 SMART ProRS_C_1_2 436 502 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 98 292 IPR006195 -
Cpe09g00073 502 PANTHER PROLYL-TRNA SYNTHETASE 2 307 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 165 309 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe09g00073 502 SUPERFAMILY C-terminal domain of ProRS 431 502 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 CDD ProRS_core_arch_euk 77 307 IPR033721 -
Cpe09g00073 502 Pfam Anticodon binding domain 307 386 IPR004154 -
Cpe09g00073 502 Gene3D Bira Bifunctional Protein; Domain 2 66 343 IPR045864 -
Cpe09g00073 502 PANTHER BNAC09G28510D PROTEIN 2 307 - -
Cpe09g00073 502 PRINTS Prolyl-tRNA synthetase signature 200 208 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 PRINTS Prolyl-tRNA synthetase signature 129 147 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 PRINTS Prolyl-tRNA synthetase signature 209 220 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 PRINTS Prolyl-tRNA synthetase signature 170 181 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 PANTHER PROLYL-TRNA SYNTHETASE 307 502 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cpe09g00073 502 SUPERFAMILY Class II aaRS ABD-related 306 428 - -
Cpe09g00073 502 SUPERFAMILY Class II aaRS and biotin synthetases 77 308 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00073 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - csv:101217773 885.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01245 Cpe-Chr3:10098343 Cpe09g00073 Cpe-Chr9:429059 1.35E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00073 Cpe_Chr09 FPKM 12.551802 13.181603 25.162922 25.923824 13.940208 14.776216 12.873115 7.611341 7.767854 8.674973