Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00080 ATGCCAGTTGCAAAACTCAAGAATTCTAACTATCCAGATGTGATGAAATCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATTGGCAAAGAGCCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGCCCAGTCCAGTGGATTCAACTACTTCATGCTCTAGATCATCATGAACTCCCAGGCTGGCCCTTGCTATCTCCTTTAAAGGTTCAAATGCAGAAGTGTGACAAGTGTCTCCTGGAATTTTTCTCGTTTATCAACTATAGAAGACATATACGAGTGTATCATAGGATGAAAAAGCCTGATAAGGATTCTGCCAAAACTAGGGATTTACTAGCAGCATTTTGGGACAAGCTATCCTGGGAAGAGACGAAGGAGGCTGTATCATTTAAAAATGGAATGCAAGGGTCAGCCGTTATCAAGAACCTGACAGCCATTATTGGAAAACCGAGATTTTCTGCCCTACCACATGTTTATTTGAGGGCAGGTTCTGCCCTTTTGGACATTGTACAAGGTAGACCGTCTAGGTTTCCCCTCTCTTCGCAGGAGCTATTTGAAATTCTTGACAATGCAAGTGAAAAAACATTCCTATGTGGAACTTCTTTCTCTATGCAAAAATATATATTTGATGGCGGGACTGTAAAGATCGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTTGCTGACAAGGATGCTGAAGCTTTGAGGTGTCAGAAGTTGCTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAAAGAAAAAGGCAGAAGAAGCTAAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACGCGAAGAGAAGGCTGATATGGAAGCGAGTGTAAATGAAACAATTGAAGACGTGTTACCTGAAGAATCATCTAGCCCTCAAACTGAATGCCACTCAGAAGGGGACTCTCTGAGCATATTGGCTGATCACATGCCATCATCTATTGAAACATCTCAACAATCTCTAACTGATGAAGACGAAGATTCTGAGTCTTGTTTTGGGTCTCACAGTGGCTACCCTGAACATCTTCCTATTGATCACAATGGTGAACGGCAGAAAATACAAATGAATGGCCATAAGCATGTAATTGCTCAGTGGCAGGCATTGCCTAAGACGCAAAGGGGACTTTCTAACGGTTATCATGCAGATCAGAATTATCAGGGACACAAAAATGGAGATATGCGAAGGCATGGAAACCATGTGCTTTCAAGGGCTGCGCCCATTGCTAATGGGAAAAAAGTATGGAGCCGGAAGCCCAAGCCAGAAAGAGATGGAGGCCGTTACCAAGCCAGGATTCTTGAAGAGACAACGGCCCAAGCGGAGGAAATTAAGAGCCATGAGGTTTTGATTGGTTCTATTTCAGTGGCACTAGGAAATTGCAACCAAGAGAGTAAAAATCCAGTTGGAGCTCCAGATGATTGCCAGGATGGTCATCAAACGCCTAAGAAGATTAATAATCATGTTCAGAAGTTCATTAAGCCAGACTCTGTTCAAACTGCAACAAATCGTGTGATGGTTAAGCTTTGGAGGCCAGTTGGTCGTAATGGAACCAAATATGCAATGCTAGAGCAAAGTGACAATGAAGAATCTGAAGCTGAAGGGATAACTGAAAAGCTAGAAGATGAGGCGCTGCTGAATACATATTCTCCACGATCCTCTTCCTTGGATGGTGACAATGGGGACTTTGGAAACAACAACTCTTTGATCCAGGAAGAGCCTGCGCAATCAGTTGGCCTGGAGTTCTCTAGTCGTGCTGCAAAAGCCTTCCTTGCACAGAGGTGGAAGGAGGCTATAACAGCCGACCACGTCAAATTGAATCTACCCTCCGATTCTGAGTCTTCTCGATGCTCTGAAATTCAAAATGACACAGAAACTTCTGCATTTCAATTGTCCAACTTCGACAGACGCAATGTTCTTGGCAATGCGATGTCAATTAATGTCGACCCTCCCAAGTCGTCCTCAGCCAATGAAGCCGGCAAGTCCAAGTTCAGGACAAAATTTGAAAAGGAGCCAATTTTACCAATGATTTTCGTGTAA 2109 43.43 MPVAKLKNSNYPDVMKSEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDHHELPGWPLLSPLKVQMQKCDKCLLEFFSFINYRRHIRVYHRMKKPDKDSAKTRDLLAAFWDKLSWEETKEAVSFKNGMQGSAVIKNLTAIIGKPRFSALPHVYLRAGSALLDIVQGRPSRFPLSSQELFEILDNASEKTFLCGTSFSMQKYIFDGGTVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRQKKLRQKEQRSKEQKREEKADMEASVNETIEDVLPEESSSPQTECHSEGDSLSILADHMPSSIETSQQSLTDEDEDSESCFGSHSGYPEHLPIDHNGERQKIQMNGHKHVIAQWQALPKTQRGLSNGYHADQNYQGHKNGDMRRHGNHVLSRAAPIANGKKVWSRKPKPERDGGRYQARILEETTAQAEEIKSHEVLIGSISVALGNCNQESKNPVGAPDDCQDGHQTPKKINNHVQKFIKPDSVQTATNRVMVKLWRPVGRNGTKYAMLEQSDNEESEAEGITEKLEDEALLNTYSPRSSSLDGDNGDFGNNNSLIQEEPAQSVGLEFSSRAAKAFLAQRWKEAITADHVKLNLPSDSESSRCSEIQNDTETSAFQLSNFDRRNVLGNAMSINVDPPKSSSANEAGKSKFRTKFEKEPILPMIFV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 475069 480346 - Cp4.1LG09g00790.1 Cpe09g00080 474446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00080 702 Coils Coil 269 308 - -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 670 684 - -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 275 302 - -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 668 687 - -
Cpe09g00080 702 Coils Coil 546 566 - -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 339 358 - -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 308 325 - -
Cpe09g00080 702 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Cpe09g00080 702 MobiDBLite consensus disorder prediction 275 325 - -
Cpe09g00080 702 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Cpe09g00080 702 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00080 - - - cmos:111449426 1327.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00080 Cpe14g00101 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00101 Cpe-Chr14:547642 Cpe09g00080 Cpe-Chr9:475069 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49954 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00080 Cpe_Chr09 FPKM 4.797085 4.5912 4.417897 4.241414 8.021239 7.980737 7.22362 5.374452 5.885166 4.993314