Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00089 ATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACATCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCGAAAGATCCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGAATTCAAGCGCAAAAAGGGAGAATCGGATTCAAGGAACGACCCGAATAAACCACACAAAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTCTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTACTTTGCCGGAGACGAGGCCACAGCCTCAAGAACTGCCCCGACAAAACTGAAGACACAGTGGATAAGAAGCTATGCTATAATTGTGGTGAAACAGGACATTCACTAGCTAATTGTCCACAACCTCTTCAACATGGGGGAACTAAATTTGCCAATTGTTTTATTTGTAATGAAAGCGGACACTTAAGCAAGAACTGCCCAAAGAATACTCATGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACCCAAGTTTATGCTGGGCCTGGTGTATCTAGTAACAGATCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACAAAGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAAGAAAAAGTGTCCCAAAGTTGTGAAGTTCATGGATTGA 807 44.49 MVSRRQKLARKKYREEHPELFPKAEPTPPKDPEKKKKKKKKSEFKRKKGESDSRNDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKICLLCRRRGHSLKNCPDKTEDTVDKKLCYNCGETGHSLANCPQPLQHGGTKFANCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVYAGPGVSSNRSSGYVEMSRRPETKLVSGDDLEDDFMVEEDNLQIKDAKLGKKKCPKVVKFMD 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 523419 525934 + Cp4.1LG09g00860.1 Cpe09g00089 474455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00089 268 Pfam Zinc knuckle 104 120 IPR025836 -
Cpe09g00089 268 Pfam Zinc knuckle 185 201 IPR025836 -
Cpe09g00089 268 MobiDBLite consensus disorder prediction 45 59 - -
Cpe09g00089 268 Gene3D - 155 211 - -
Cpe09g00089 268 Gene3D - 74 125 - -
Cpe09g00089 268 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 SMART c2hcfinal6 80 96 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 Gene3D - 126 154 - -
Cpe09g00089 268 ProSiteProfiles Zinc finger CCHC-type profile. 159 174 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 PANTHER OS04G0555800 PROTEIN 1 267 - -
Cpe09g00089 268 SUPERFAMILY Retrovirus zinc finger-like domains 125 175 IPR036875 GO:0003676|GO:0008270
Cpe09g00089 268 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 SUPERFAMILY Retrovirus zinc finger-like domains 74 122 IPR036875 GO:0003676|GO:0008270
Cpe09g00089 268 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 Pfam Zinc knuckle 131 147 IPR001878 GO:0003676|GO:0008270
Cpe09g00089 268 MobiDBLite consensus disorder prediction 1 71 - -
Cpe09g00089 268 MobiDBLite consensus disorder prediction 12 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00089 - - - cmos:111449917 489.574
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00089 Cpe14g00107 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00089 Cpe-Chr9:523419 Cpe18g00670 Cpe-Chr18:6742435 1.01E-09 dispersed
Cpe07g00621 Cpe-Chr7:4294926 Cpe09g00089 Cpe-Chr9:523419 8.52E-06 transposed
Cpe14g00107 Cpe-Chr14:589167 Cpe09g00089 Cpe-Chr9:523419 2.47E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00089 Cpe_Chr09 FPKM 51.755749 55.887077 50.279106 52.998264 73.023735 82.705795 73.547295 44.577068 45.45298 42.544319