Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00092 ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAATTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTCGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGATTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGGCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGATTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTCACCTTATTGATATGTACTTGTGGTGATGCAGGCTTGGCTAGGAAAGTTGTCGAGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCGTATAATGCCATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTTGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGGTTGCTTGATGAAATGGCCAGGAATGGGTTCTCTCCTGATTATCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGTTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGCGAATTCGAGGAAGCTTATACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAAACCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTCAAGGGATATAGAAGATGCTAG 1428 41.81 MNALSLLSARIVCRLVSNSFIVRRTIWNRSFGSDDRFEFVMEPYKKGFERSESCEFESLRCDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKIENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQMLLDGHSSDMLTYNLLLYARCKLGKLDQFHRLLDEMARNGFSPDYHTYNILLYVLGKGDKPLAALNLLNHMREVGSDPSILHFTTLINGLSRAGNLDACKYFFDELSNNGCTPDVVCYTVMITSYTVAGEHEKARELFDEMVIKGQLPNVFTYNSMIRGFCMVGEFEEAYTMLEEMESRGCKPNFLVYSTLVSYLRNAGQLSEAHKVITHMVEKGQYAHLVTKFKGYRRC 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 531877 533304 - Cp4.1LG09g00920.1 Cpe09g00092 474458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00092 475 Gene3D Tetratricopeptide repeat domain 390 460 IPR011990 GO:0005515
Cpe09g00092 475 Gene3D Tetratricopeptide repeat domain 237 318 IPR011990 GO:0005515
Cpe09g00092 475 Gene3D Tetratricopeptide repeat domain 319 389 IPR011990 GO:0005515
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Cpe09g00092 475 Pfam PPR repeat 328 356 IPR002885 -
Cpe09g00092 475 PANTHER OS10G0506000 PROTEIN 51 475 - -
Cpe09g00092 475 Gene3D Tetratricopeptide repeat domain 108 232 IPR011990 GO:0005515
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Cpe09g00092 475 SUPERFAMILY HCP-like 223 423 - -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 152 184 IPR002885 -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Cpe09g00092 475 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cpe09g00092 475 Pfam PPR repeat family 254 299 IPR002885 -
Cpe09g00092 475 Pfam PPR repeat family 358 406 IPR002885 -
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Cpe09g00092 475 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 51 475 - -
Cpe09g00092 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cpe09g00092 475 Pfam Pentatricopeptide repeat domain 417 460 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00092 - - - bhj:120070214 834.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00092 Cpe14g00109 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00092 Cpe-Chr9:531877 Cpe03g01115 Cpe-Chr3:9166718 1.08E-25 dispersed
Cpe14g00109 Cpe-Chr14:598176 Cpe09g00092 Cpe-Chr9:531877 1.77E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00092 Cpe_Chr09 FPKM 13.1203 11.620334 32.005993 33.000477 6.650614 5.690301 7.486361 18.462835 21.119215 29.010567