Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00113 | ATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGTAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACAGCTCCTGCTCCTGCTGCACATACCCACCCTGTTGGTGGGTCTGGGTTTTCCTCTGACGCTACAGCCGCCGCTGCCGCCGGGGAGTTCGTGGACGAGGAAGAACTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA | 567 | 55.2 | MSDDTQSSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAAHTHPVGGSGFSSDATAAAAAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 658358 | 658924 | + | Cp4.1LG09g01060.1 | Cpe09g00113 | 474479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00113 | 188 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | SMART | rav1_2 | 22 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cpe09g00113 | 188 | Gene3D | AP2/ERF domain | 22 | 79 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE | 9 | 187 | - | - | |
Cpe09g00113 | 188 | MobiDBLite | consensus disorder prediction | 106 | 129 | - | - | |
Cpe09g00113 | 188 | MobiDBLite | consensus disorder prediction | 164 | 188 | - | - | |
Cpe09g00113 | 188 | MobiDBLite | consensus disorder prediction | 167 | 188 | - | - | |
Cpe09g00113 | 188 | SUPERFAMILY | DNA-binding domain | 22 | 79 | IPR016177 | GO:0003677 | |
Cpe09g00113 | 188 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | PRINTS | Ethylene responsive element binding protein signature | 60 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 187 | - | - | |
Cpe09g00113 | 188 | Pfam | AP2 domain | 21 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe09g00113 | 188 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cpe09g00113 | 188 | CDD | AP2 | 21 | 80 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g01036 | Cpe-Chr8:7953089 | Cpe09g00113 | Cpe-Chr9:658358 | 6.89E-37 | dispersed | |
Cpe09g00113 | Cpe-Chr9:658358 | Cpe05g00676 | Cpe-Chr5:4119634 | 2.99E-34 | dispersed | |
Cpe13g00177 | Cpe-Chr13:1392367 | Cpe09g00113 | Cpe-Chr9:658358 | 2.48E-12 | wgd | |
Cpe05g00305 | Cpe-Chr5:1712001 | Cpe09g00113 | Cpe-Chr9:658358 | 2.26E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49958 | PF00847 | AP2 | 8.60E-11 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00113 | - | - | cmos:111449416 | 296.975 |