Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00113 ATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGTAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACAGCTCCTGCTCCTGCTGCACATACCCACCCTGTTGGTGGGTCTGGGTTTTCCTCTGACGCTACAGCCGCCGCTGCCGCCGGGGAGTTCGTGGACGAGGAAGAACTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA 567 55.2 MSDDTQSSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAAHTHPVGGSGFSSDATAAAAAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 658358 658924 + Cp4.1LG09g01060.1 Cpe09g00113 474479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00113 188 ProSiteProfiles AP2/ERF domain profile. 22 78 IPR001471 GO:0003700|GO:0006355
Cpe09g00113 188 SMART rav1_2 22 84 IPR001471 GO:0003700|GO:0006355
Cpe09g00113 188 MobiDBLite consensus disorder prediction 1 37 - -
Cpe09g00113 188 Gene3D AP2/ERF domain 22 79 IPR036955 GO:0003700|GO:0006355
Cpe09g00113 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 9 187 - -
Cpe09g00113 188 MobiDBLite consensus disorder prediction 106 129 - -
Cpe09g00113 188 MobiDBLite consensus disorder prediction 164 188 - -
Cpe09g00113 188 MobiDBLite consensus disorder prediction 167 188 - -
Cpe09g00113 188 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Cpe09g00113 188 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cpe09g00113 188 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Cpe09g00113 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 187 - -
Cpe09g00113 188 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Cpe09g00113 188 MobiDBLite consensus disorder prediction 1 21 - -
Cpe09g00113 188 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01036 Cpe-Chr8:7953089 Cpe09g00113 Cpe-Chr9:658358 6.89E-37 dispersed
Cpe09g00113 Cpe-Chr9:658358 Cpe05g00676 Cpe-Chr5:4119634 2.99E-34 dispersed
Cpe13g00177 Cpe-Chr13:1392367 Cpe09g00113 Cpe-Chr9:658358 2.48E-12 wgd
Cpe05g00305 Cpe-Chr5:1712001 Cpe09g00113 Cpe-Chr9:658358 2.26E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49958 PF00847 AP2 8.60E-11 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00113 - - cmos:111449416 296.975