Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00143 ATGGCGTCTCCCGTTCCTTCCGATGTTTGCGATGGACCCGTCCTCAGTCTCATCAACAAGCGTCTCCGCGCCCTTCGCAAGAAGCATAATCGCATTCTTCAGATGGAGGAGGCTATTGCTCAAGGAAAACCCATCAACAAAGAGCAAGAGGAAGTCCTTCGCTCTAAACCTACTGTGTCTGCCCTAATCGATGAGCTTGAAAAGCTTCGCCCACCGCTTGCGTCGGCTGTCTCTGAGGAAATCAACTTGGCTGTTCAACGCCAGCAGGCGAGTGTCTCCCCTCAACCCGTTTCAACCGATGATTCACCTTCGGAGGTTGTGGATGACAAGGCCAGTGTCGAGAAAGACCAGGACGAGCACGCTGTTGTCGAAGATCTTCTAAACCTCCTCTACTTTGGCTCTTTGTTTGACGTCAAGTCTCAAAGCGATTTCACTTCGACGATGCTTACGAGAACGCACGAGAGGGGTTGCTGCCTCACGTACGATTATGTCACTGACGATGCTACCGATCTTCTGGCCGAGAGGGATCTGGATTTGATATCGACGATGAGCGGGCTACTGATCTCACGTCCCGTAGATTCGAATTTGCCGCATAAGAATGCGTTGGAGCGTTGCATCGAGCACGCTAATCTTTGGCTCACGAAGGCAGACAAGTCTATTGGGCCCAACACGGATGTTACTTATGCGAACTTGAGGGAGAGGCTGCACAAGATAATGGCGTCGGAGTACTTCACTACCACGCCTGAGATAAAAGGTCCTGTTGAAGTAGCTGCTGTTGCTGCAGGAAACTATGCCAATTTCCAGGTTCCGGTAGCTGTCCATGAAGAAGATTCTGCTGCAAAGTTTCAACAAACGGACGTTGACGTGGGAGAACTGCAAGGAGATGATATCAGTGATGATCAACCTGGTTCTGCTGACGAATTGCCCAGGGATATGCCGGAGGCCGGAAATTCTTCTGAACTCCTCATATCACAGCAAGAAGTGAGATCAGAAGAAGAATTTGAGCTGAAACATGGGGATGGAGATGCAAAAGAACAGCAATATGTTCCTCGAAGGGCCTATATGAACCAAAGAGGTGGCCGTGGAGTTGGTGGCCGAAGAGGAGGATACCCTAATGGTCGTGGAGGTCGCGGTGATGGAAGGGGAGGAGGTTCCTACCAGAATGGACGCCCTCGATATTATGACCAGTCAGGAAATTATTACCAGAGGAACTACTATAATGGTCGAGGAAGAGGTGGTGGGAGGGGTGGTGGTGGCCACTCATACAACAGCCATGGTTCAGCCCAAGGTGCACCCAACTCTGCAAGTATTGGCGTGGCTTCGTGA 1326 50.9 MASPVPSDVCDGPVLSLINKRLRALRKKHNRILQMEEAIAQGKPINKEQEEVLRSKPTVSALIDELEKLRPPLASAVSEEINLAVQRQQASVSPQPVSTDDSPSEVVDDKASVEKDQDEHAVVEDLLNLLYFGSLFDVKSQSDFTSTMLTRTHERGCCLTYDYVTDDATDLLAERDLDLISTMSGLLISRPVDSNLPHKNALERCIEHANLWLTKADKSIGPNTDVTYANLRERLHKIMASEYFTTTPEIKGPVEVAAVAAGNYANFQVPVAVHEEDSAAKFQQTDVDVGELQGDDISDDQPGSADELPRDMPEAGNSSELLISQQEVRSEEEFELKHGDGDAKEQQYVPRRAYMNQRGGRGVGGRRGGYPNGRGGRGDGRGGGSYQNGRPRYYDQSGNYYQRNYYNGRGRGGGRGGGGHSYNSHGSAQGAPNSASIGVAS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 842485 848313 - Cp4.1LG09g01420.1 Cpe09g00143 474509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00143 441 PANTHER GLYCINE-RICH PROTEIN 6 433 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 292 315 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 327 347 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 87 102 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 87 115 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 390 404 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 422 441 - -
Cpe09g00143 441 MobiDBLite consensus disorder prediction 327 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00143 - - - csv:101205164 629.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01435 Cpe09g00143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01435 Cpe-Chr1:8601074 Cpe09g00143 Cpe-Chr9:842485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g839 . . . . . Bpe10g00853 . . Cmo04g01701 Cmo18g01207 . Cma18g01186 . Car18g01094 Sed06g1574 Cpe09g00143 Cpe01g01435 Bhi07g01631 Tan04g1132 Cmetu10g1288 . . . . Cla05g02484 Cam05g2668 Cec05g2702 Cco05g2737 Clacu05g2670 Cmu05g2524 Cre05g2639 . . Cone8ag0623 Cone12ag0607 Lsi04g00480 Csa05g02402 Chy10g00964 Cme10g00462 Blo06g00893 . . . . . . . . . . Cma04g01623 . Car04g01664 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009367 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00143 Cpe_Chr09 FPKM 0.657895 0.329103 9.714377 8.334496 102.9123 87.71254 98.127754 0.621836 0.331779 0.20892