Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00153 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGTGTCTCGGGTAGTGACCGAATCGAAGGGGGCAAAGAAGCAGAAGAACAACAAAGAACAGGTTGAAACTGTGGAAGAGGAAACTGGCTGTTGGATTGCTCTGAGGATTTTTCGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATTAGTGGGACTAGTATTAACTATGCTGAAAGCAAGTCTACGGTGGATTCGAGTAGAGACCAGCCGACGCCTCAAGAGATATCTTCTACAAATACAAGTATGAGTAATGCAGAGAGTAATTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATATCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCGACAAGGAACTTCAGACCGGAGAGTCTTCTTGGTGAGGGCGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAACGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACGCTCAACCATGATGGTCTTCAAGGCCATAAAGAGTGGATGGCTGAGGTGAATTTTCTTAGTGATCTCAAACATCCCAACTTGGTCAAACTTATCGGTTACTGCAACGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCCAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCACTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCACGAAGAAGCGAAAAGGCCGGTTATATATCGTGATTTCAAAACATCCAACATCCTATTAGACGCCGTATGTGACAGAAACTATGGACATCTTACATCAAGGAGTGATGTGTATAGTTTCGGAGTCGTTCTTCTTGAAATGTTAACTGGCAGAAGATCCATGGACAAAAACCGTCCTAACGGTGAACATAATCTTGTCGAGTGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTACCGTTTGATAGACCCTAGGCTTGAAGGGCATTTCTCAATAAAAGGTGCTCAAAAGGCAGTACAATTGGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTAATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCCGACCGTGTCCGATCGAGCCCAATGGCGAGAAATGGCTACCACACAGCTGCAGGACCAGTTCCGAAGAACGGGCAGCAACTACGCAGCCATTCAATCGCCAATGGATCTCATGCTTCTCCATATCATCATCAGCAGCAACCCCATCCATCTCCAAAACCCAATGTCAAACCCTGA 1365 44.62 MEVIAEDGKVVSRVVTESKGAKKQKNNKEQVETVEEETGCWIALRIFRSCISSRSKVDSSISGTSINYAESKSTVDSSRDQPTPQEISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVKLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAVCDRNYGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRVRSSPMARNGYHTAAGPVPKNGQQLRSHSIANGSHASPYHHQQQPHPSPKPNVKP 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 892403 896058 + Cp4.1LG09g01540.1 Cpe09g00153 474519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00153 454 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 281 443 - -
Cpe09g00153 454 PANTHER OS01G0588500 PROTEIN-RELATED 64 274 - -
Cpe09g00153 454 MobiDBLite consensus disorder prediction 69 107 - -
Cpe09g00153 454 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Cpe09g00153 454 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 64 274 - -
Cpe09g00153 454 Pfam Protein tyrosine and serine/threonine kinase 280 376 IPR001245 GO:0004672|GO:0006468
Cpe09g00153 454 Pfam Protein tyrosine and serine/threonine kinase 135 273 IPR001245 GO:0004672|GO:0006468
Cpe09g00153 454 MobiDBLite consensus disorder prediction 69 103 - -
Cpe09g00153 454 PANTHER OS01G0588500 PROTEIN-RELATED 281 443 - -
Cpe09g00153 454 SMART serkin_6 131 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00153 454 Gene3D Transferase(Phosphotransferase) domain 1 217 277 - -
Cpe09g00153 454 Gene3D Transferase(Phosphotransferase) domain 1 278 397 - -
Cpe09g00153 454 MobiDBLite consensus disorder prediction 419 442 - -
Cpe09g00153 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Cpe09g00153 454 SUPERFAMILY Protein kinase-like (PK-like) 107 376 IPR011009 -
Cpe09g00153 454 ProSiteProfiles Protein kinase domain profile. 131 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00153 454 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cpe09g00153 454 MobiDBLite consensus disorder prediction 402 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00153 - - - csv:101203209 805.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00153 Cpe-Chr9:892403 Cpe05g00923 Cpe-Chr5:6065716 5.05E-126 dispersed
Cpe19g00349 Cpe-Chr19:3062140 Cpe09g00153 Cpe-Chr9:892403 9.31E-97 dispersed
Cpe14g00440 Cpe-Chr14:2753742 Cpe09g00153 Cpe-Chr9:892403 9.90E-110 transposed
Cpe01g01444 Cpe-Chr1:8651854 Cpe09g00153 Cpe-Chr9:892403 0 wgd
Cpe01g02381 Cpe-Chr1:19908076 Cpe09g00153 Cpe-Chr9:892403 0 wgd
Cpe13g00939 Cpe-Chr13:7922516 Cpe09g00153 Cpe-Chr9:892403 4.02E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g850 Blo01g00415 Blo16g01134 Bda01g02251 Bda11g01235 Bpe13g01432 . . . Cmo04g01710 Cmo18g01199 . Cma18g01174 . . . Cpe09g00153 . Bhi07g01604 . . . . . . Cla05g02471 . . . . . . . . . . Lsi04g00457 Csa05g02420 Chy10g00975 Cme10g00446 . . . Bda11g01235 . . . . . Cmo04g02882 . . . Car04g01672 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000926 5 6 4 2 3 0 2 0 0 1 2 0 3 2 0 3 0 0 4 0 2 0 0 0 0 2 0 0 0 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62586 PF07714 PK_Tyr_Ser-Thr 6.50E-25 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00153 Cpe_Chr09 FPKM 27.774305 30.622644 0.197289 0.0 0.315067 0.0 0.302978 4.572571 3.50374 3.539589