Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00164 | ATGACAAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTTCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACAAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAAACAGGCCTCTTTTTCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCCGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 897 | 43.14 | MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKPPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 956347 | 958677 | - | Cp4.1LG09g01620.1 | Cpe09g00164 | 474530 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00164 | 298 | Coils | Coil | 131 | 179 | - | - | |
Cpe09g00164 | 298 | CDD | homeodomain | 84 | 140 | IPR001356 | GO:0003677 | |
Cpe09g00164 | 298 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 4 | 298 | IPR045224 | GO:0003700 | |
Cpe09g00164 | 298 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Cpe09g00164 | 298 | Gene3D | - | 76 | 146 | - | - | |
Cpe09g00164 | 298 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
Cpe09g00164 | 298 | MobiDBLite | consensus disorder prediction | 240 | 257 | - | - | |
Cpe09g00164 | 298 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe09g00164 | 298 | PRINTS | Lambda-repressor HTH signature | 110 | 119 | IPR000047 | GO:0003677 | |
Cpe09g00164 | 298 | PRINTS | Lambda-repressor HTH signature | 119 | 135 | IPR000047 | GO:0003677 | |
Cpe09g00164 | 298 | MobiDBLite | consensus disorder prediction | 180 | 273 | - | - | |
Cpe09g00164 | 298 | Pfam | Homeobox associated leucine zipper | 139 | 179 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe09g00164 | 298 | SUPERFAMILY | Homeodomain-like | 73 | 141 | IPR009057 | - | |
Cpe09g00164 | 298 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 4 | 298 | - | - | |
Cpe09g00164 | 298 | Pfam | Homeodomain | 84 | 137 | IPR001356 | GO:0003677 | |
Cpe09g00164 | 298 | SMART | HOX_1 | 82 | 143 | IPR001356 | GO:0003677 | |
Cpe09g00164 | 298 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g01454 | Cpe09g00164 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00164 | Cpe-Chr9:956347 | Cpe14g00626 | Cpe-Chr14:3994854 | 1.98E-38 | dispersed | |
Cpe01g01454 | Cpe-Chr1:8707125 | Cpe09g00164 | Cpe-Chr9:956347 | 0 | wgd | |
Cpe01g02383 | Cpe-Chr1:19921644 | Cpe09g00164 | Cpe-Chr9:956347 | 1.15E-76 | wgd | |
Cpe13g00941 | Cpe-Chr13:7932558 | Cpe09g00164 | Cpe-Chr9:956347 | 8.92E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49962 | PF00046 | Homeodomain | 2.90E-15 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00164 | K09338 | - | csv:101221595 | 529.25 |