Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00164 ATGACAAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTTCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACAAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAAACAGGCCTCTTTTTCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCCGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 897 43.14 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKPPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 956347 958677 - Cp4.1LG09g01620.1 Cpe09g00164 474530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00164 298 Coils Coil 131 179 - -
Cpe09g00164 298 CDD homeodomain 84 140 IPR001356 GO:0003677
Cpe09g00164 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 298 IPR045224 GO:0003700
Cpe09g00164 298 MobiDBLite consensus disorder prediction 187 209 - -
Cpe09g00164 298 Gene3D - 76 146 - -
Cpe09g00164 298 MobiDBLite consensus disorder prediction 62 84 - -
Cpe09g00164 298 MobiDBLite consensus disorder prediction 240 257 - -
Cpe09g00164 298 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Cpe09g00164 298 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Cpe09g00164 298 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Cpe09g00164 298 MobiDBLite consensus disorder prediction 180 273 - -
Cpe09g00164 298 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355|GO:0043565
Cpe09g00164 298 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Cpe09g00164 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 298 - -
Cpe09g00164 298 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Cpe09g00164 298 SMART HOX_1 82 143 IPR001356 GO:0003677
Cpe09g00164 298 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01454 Cpe09g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00164 Cpe-Chr9:956347 Cpe14g00626 Cpe-Chr14:3994854 1.98E-38 dispersed
Cpe01g01454 Cpe-Chr1:8707125 Cpe09g00164 Cpe-Chr9:956347 0 wgd
Cpe01g02383 Cpe-Chr1:19921644 Cpe09g00164 Cpe-Chr9:956347 1.15E-76 wgd
Cpe13g00941 Cpe-Chr13:7932558 Cpe09g00164 Cpe-Chr9:956347 8.92E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49962 PF00046 Homeodomain 2.90E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00164 K09338 - csv:101221595 529.25