Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00165 ATGAATCCTGGTGGGTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACGGAGAAGGATATCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTGAGGTCTGGTGAAGATGCCTGCACTGCATATGTGTCATTCAAAGATGCTTACTCTCAAGAGACTGCTTGCCTGCTGAGTGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTCGATGAAGAATTTGATTTCTGGAGCAGGCCTTCCGGTGACCATGAAGAAGACGGTACTCCTGCTTCGGCTCAAAGAAGTCAGTTTGTTTCCACCGCTGGAACCGCAGTGTCCATGGCCCAGGACGTAGTCAAAACCATGCTGGCCATGGGGTATGAAGCGGCTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACCAAATCAGCTATATCAGCCACTGGAAGAACAGCTGCTGCTGCTGCTGATACGGTGGTTAGGAGTAGCTACTTCTCCAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCTGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGGAGGCCATATGGATGGATGCATGATTTGGGCGCAACAAGAATGAAGTCCCGCAAGCAATATCATGATGGTTCCTTCCAGCTGCAATTGTCTGAGACTTGCAGCTCACTCCAGCAGGCAATAGCCTCCTACAAGTTA 726 49.86 MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETACLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGDHEEDGTPASAQRSQFVSTAGTAVSMAQDVVKTMLAMGYEAAKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGRPYGWMHDLGATRMKSRKQYHDGSFQLQLSETCSSLQQAIASYKL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 963508 966685 - Cp4.1LG09g01660.1 Cpe09g00165 474531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00165 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Cpe09g00165 242 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 136 - -
Cpe09g00165 242 Gene3D - 5 76 IPR012677 -
Cpe09g00165 242 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Cpe09g00165 242 SMART rrm1_1 7 77 IPR000504 GO:0003723
Cpe09g00165 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Cpe09g00165 242 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 131 198 - -
Cpe09g00165 242 CDD RRM_Vip1_like 8 76 IPR034360 -
Cpe09g00165 242 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 131 198 - -
Cpe09g00165 242 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00165 - - - csv:101221355 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00165 Cpe-Chr9:963508 Cpe14g00976 Cpe-Chr14:8255995 9.32E-20 dispersed
Cpe01g02385 Cpe-Chr1:19932546 Cpe09g00165 Cpe-Chr9:963508 5.16E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00165 Cpe_Chr09 FPKM 8.977831 9.363106 3.574146 3.331121 8.672609 6.863379 7.482691 1.966507 2.24448 1.972807