Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00173 ATGGGAAGGGTGAGCTTGCCGCCACCTGTTTGTGATACAAATCTCTCGCAGAGAGTGTCTTTTGAGAGCAATAACCTCCGTGAAGCCTCTTTTTCTTCTTACTTGAACCATGCAGAGCAAGAATTTGTGCGAAAACTTGCTGAATCAACTCGAAATCGTTCCAATAATTCCACCATTACCACGACAGCTCAAGAACAAGATGAAGATCATATAGAAGTTTTTGGAGCAGAGAAGTATTTCAATGGCGGAATTAACAGCCCAGAGCCCATCAAATTCTGCCCTGAAAATAAAAAACAGAGCAAGAAGCCTAAAAGTTGCAGCTCAACTCGTTCTGAAGGGAGTTGGAATAGCCAAAATGGTTTGTTGCAGAATGTAAATAGAAAATCTTCCAAGGAAATTAAGAAGAAATCGTCACAATTGGCGAAGATTTTGCTGTATAAATGCTATTGCTGCAACAACAAGTCCGTGGAAGTGAAGAACAATGACAAATCGCCGCCGACCAAATCAGGGATAAATTTCACGTTTCCGAGCTCAATACCAGAGGCCACGAAGAACACGGCGCTGAAAATACAAATTCAAGGCCGGAAATCGATTGAGGTTTTTGGATCCCCAAATGTCGATGCTTTGAACATGAATCATTTGGAGAAGAGGCTGTCTGTAATGGCGTGGAACGACGTCGTTCCGAGAGTGAAGGCTTCTGATTCCGATCAAATCTACGACGAGGACGCCGGAAGTGATGCAAGTTCGGATCTTTTTGAGATTGAGAGCTTAACGGGGAACCCCAATTCGATTCTCACAAGACAGGGCTCTGATTGCTCTGATTGTGTAACACCCACCACGCCAAGCGAGGCGAGCATTGAGTGGAGTGTCACCACAGCCAGCGCCGCTGATTTCTCCGTCGTGTCGGACTACGATGAACGGCGGCTCTCCACCACCGCTGCAGCCTACATGACTAAATCCAGCTACGAGAGCGACGTGGAGAATATTCATTGGCGGCGTTCGAATCTTCTGATGGGTTGTAAGAATCAGAAAGCGGTGAGAGTGGCCGGAGATAAGTACGATTCTCCGGCGGAAGTTCGCCGGAGAACGGCGTCGTTTGGAAGGCTGATGAGGTTCGAAGCTGATACCAAAATTATGGGGTTTAGCTCGAATCAGAGATTTGCTTGTACGCTTCACTCATGA 1182 46.53 MGRVSLPPPVCDTNLSQRVSFESNNLREASFSSYLNHAEQEFVRKLAESTRNRSNNSTITTTAQEQDEDHIEVFGAEKYFNGGINSPEPIKFCPENKKQSKKPKSCSSTRSEGSWNSQNGLLQNVNRKSSKEIKKKSSQLAKILLYKCYCCNNKSVEVKNNDKSPPTKSGINFTFPSSIPEATKNTALKIQIQGRKSIEVFGSPNVDALNMNHLEKRLSVMAWNDVVPRVKASDSDQIYDEDAGSDASSDLFEIESLTGNPNSILTRQGSDCSDCVTPTTPSEASIEWSVTTASAADFSVVSDYDERRLSTTAAAYMTKSSYESDVENIHWRRSNLLMGCKNQKAVRVAGDKYDSPAEVRRRTASFGRLMRFEADTKIMGFSSNQRFACTLHS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1015571 1016752 - Cp4.1LG09g01830.1 Cpe09g00173 474539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00173 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 172 382 IPR039615 GO:0009638
Cpe09g00173 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 11 164 IPR039615 GO:0009638
Cpe09g00173 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1 172 382 - -
Cpe09g00173 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1 11 164 - -
Cpe09g00173 393 MobiDBLite consensus disorder prediction 49 64 - -
Cpe09g00173 393 MobiDBLite consensus disorder prediction 106 127 - -
Cpe09g00173 393 MobiDBLite consensus disorder prediction 47 66 - -
Cpe09g00173 393 MobiDBLite consensus disorder prediction 90 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00173 - - - cmos:111449333 738.799
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01461 Cpe09g00173 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01371 Cpe-Chr8:9853283 Cpe09g00173 Cpe-Chr9:1015571 1.56E-08 dispersed
Cpe01g01461 Cpe-Chr1:8753054 Cpe09g00173 Cpe-Chr9:1015571 1.15E-133 wgd
Cpe02g01354 Cpe-Chr2:11950995 Cpe09g00173 Cpe-Chr9:1015571 9.35E-20 wgd
Cpe02g01065 Cpe-Chr2:9758355 Cpe09g00173 Cpe-Chr9:1015571 3.06E-31 wgd
Cpe20g00025 Cpe-Chr20:134287 Cpe09g00173 Cpe-Chr9:1015571 9.17E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g904 . Blo16g01118 Bda01g02160 Bda11g01219 . Bpe10g00867 Bma14g01640 Bma15g00161 . Cmo18g01181 . Cma18g01157 . Car18g01066 Sed08g1988 Cpe09g00173 Cpe01g01461 Bhi07g01573 Tan04g1087 Cmetu10g1435 Lac13g0312 Hepe10g1735 . . Cla05g02448 Cam05g2634 Cec05g2667 Cco05g2705 Clacu05g2637 Cmu05g2491 Cre05g2604 . . Cone6ag0592 Cone9ag0595 Lsi04g00431 Csa05g02443 Chy10g00995 Cme10g00422 Blo06g00904 Blo11g00769 . Bda11g01219 Bpe11g01639 Bpe02g02346 Bma01g00095 Bma06g00683 . . . Cma04g01652 . Car04g01693 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004283 3 1 3 5 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00173 Cpe_Chr09 FPKM 20.368027 21.64772 45.109333 44.73391 74.071045 78.276054 71.56424 27.99279 30.12779 32.613297