Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00176 ATGGAAGCTGGGAAGCAAAGTGATGTGGTGTTGTTTGGAACGTGGTATAGCTCATACTGCACCAGGATTATTCTAGCACTCAAAATGAAAGGCATAAACTTTGAGTATGTGGAAGAAGATTTAGCAAACAAGAGTGAATTGCTTATCAACTTCAATCCAGTTCATCAGAAAGTCCCTGTGCTCATCCATAAGGGAAAGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAGCATTGGAATCACCGTCCCAAAATTCTTCCTGAAGACCCTTATGAAAGATCCAAAGTTCGTTTCTGGGCTCAATTCTATGACCAAAAGATCATTTTAGGCACCTTGCCAATCTTCAAGTCCAAAGGAGAAGAAAGAGAGGCAGCTTGTGAGGAGCTATCAAAACTGATAAGGGTATTTGAAGAAGGAATGAAGAAAGATTTTCCACGAAAATTTCCCTTTTATGACGGAAAAAACTTGGGACTTCTTGATATAGTTGTGGGGCCTAATGCCTGCAACTATTTGGCACTGCGTGAGATTCTTGGAGATGTAATTGGCTCAAAAAGAAACCCTGATTTTCTCTCATGGGTGGATGCTTTGAAGGACCATCCTCTGATTAAGGAAACTCTTCCTCCTCACCATAAAATGGTTCAGAAGCTGAAAGAGAAGATCCCTCAAAAGCCTAAAGATCACTGA 693 40.69 MEAGKQSDVVLFGTWYSSYCTRIILALKMKGINFEYVEEDLANKSELLINFNPVHQKVPVLIHKGKPIAESFVILEYIEEHWNHRPKILPEDPYERSKVRFWAQFYDQKIILGTLPIFKSKGEEREAACEELSKLIRVFEEGMKKDFPRKFPFYDGKNLGLLDIVVGPNACNYLALREILGDVIGSKRNPDFLSWVDALKDHPLIKETLPPHHKMVQKLKEKIPQKPKDH 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1030360 1031304 + Cp4.1LG09g01690.1 Cpe09g00176 474542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00176 230 Pfam Glutathione S-transferase, N-terminal domain 9 79 IPR004045 -
Cpe09g00176 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 222 IPR010987 -
Cpe09g00176 230 CDD GST_N_Tau 9 82 - -
Cpe09g00176 230 ProSiteProfiles Glutaredoxin domain profile. 1 96 - -
Cpe09g00176 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 86 IPR004045 -
Cpe09g00176 230 SUPERFAMILY GST C-terminal domain-like 80 221 IPR036282 -
Cpe09g00176 230 SFLD Glutathione Transferase (cytosolic) 6 222 IPR040079 -
Cpe09g00176 230 SUPERFAMILY Thioredoxin-like 8 110 IPR036249 -
Cpe09g00176 230 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 222 - -
Cpe09g00176 230 Gene3D Glutaredoxin 5 88 - -
Cpe09g00176 230 CDD GST_C_Tau 93 221 IPR045074 GO:0004364|GO:0006749
Cpe09g00176 230 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 222 IPR045073 -
Cpe09g00176 230 SFLD Main.3: Omega- and Tau-like 6 222 IPR045073 -
Cpe09g00176 230 Gene3D - 89 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00176 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100260235 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00176 Cpe-Chr9:1030360 Cpe03g01662 Cpe-Chr3:12704731 9.69E-54 dispersed
Cpe20g00021 Cpe-Chr20:120671 Cpe09g00176 Cpe-Chr9:1030360 6.94E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g910 . . . . . . . . . . . . . . . Cpe09g00176 . . . . . . . . . . . . . . . . . . . . . Chy10g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00176 Cpe_Chr09 FPKM 1.588857 1.153288 6.129593 5.296235 3.410107 4.090338 2.343093 61.748783 66.779442 57.210461