Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00178 ATGTTCATCTATTACAGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTTACTTACCGCCACACCCTCCGATCCCACTTCTCTAAATTGCGCAGCCTGTGGTTGCCACCGCAACTTCCACCGCCGTGAACCGGACGATTCCTGGCAGAATCTCCCCACCCACCGACGTTTCCAATCATATCGCCTCTGCACACCGCCGTCGCCGAAGCCTCAAAGCCCATCCTCGCCGATCCCTTTACAGATTTCGCACATCCCACCGCCAGTTCACTTCTCCGCCCCTCATATGTTGCTGGCATTGAGCACCGGCGCGGCGGCGCAAGAGCAGCGTGGCGGTCGATTCAACCCAAAACAGAGGAAGAGAAACAGGACCAAATTCAGCAGGGATCAAAAGCAAAAGATGCGATCTTTCTCCGAGAAAATGGGATGGAAAATTGGGAAATGTGATGAAAGGTTAGTGGAGGAATTCTGTAATGAAATTGGGATCGGAAAACGGGTGCTTAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGATTCTCAGAGTAGCGAAAATGGAAGGGATGACTCAAAACAGAGCTCATAA 642 51.56 MFIYYRECLKNHAATVGGHALDGCGEFMPLLTATPSDPTSLNCAACGCHRNFHRREPDDSWQNLPTHRRFQSYRLCTPPSPKPQSPSSPIPLQISHIPPPVHFSAPHMLLALSTGAAAQEQRGGRFNPKQRKRNRTKFSRDQKQKMRSFSEKMGWKIGKCDERLVEEFCNEIGIGKRVLRVWMHNNKYMGGRTEKNRDSQSSENGRDDSKQSS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1036932 1037573 - Cp4.1LG09g01800.1 Cpe09g00178 474544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00178 213 MobiDBLite consensus disorder prediction 190 213 - -
Cpe09g00178 213 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Cpe09g00178 213 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
Cpe09g00178 213 MobiDBLite consensus disorder prediction 116 149 - -
Cpe09g00178 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 196 - -
Cpe09g00178 213 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cpe09g00178 213 Gene3D - 115 191 - -
Cpe09g00178 213 MobiDBLite consensus disorder prediction 189 213 - -
Cpe09g00178 213 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
Cpe09g00178 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 3 196 - -
Cpe09g00178 213 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00513 Cpe-Chr3:3026427 Cpe09g00178 Cpe-Chr9:1036932 5.11E-65 dispersed
Cpe04g00062 Cpe-Chr4:611328 Cpe09g00178 Cpe-Chr9:1036932 9.97E-60 dispersed
Cpe09g00178 Cpe-Chr9:1036932 Cpe11g00465 Cpe-Chr11:2623784 2.88E-46 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe09g00178 Cpe-Chr9:1036932 5.95E-65 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe09g00178 Cpe-Chr9:1036932 4.83E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49965 PF04770 ZF-HD_dimer 4.80E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00178 - - cmo:103489117 307.375