Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00179 ATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGGTGTTTGATTTCTGGTTGCGGAGAATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGTATGCTCATCGGAAGTGTATACAGCATTGGTGCAATGAAAAAGGGGATATCATTTGTGAGATTTGTCATCAGCCTTACCAGCCTGATTATACAGCTCCACCACCTCCCCCTCGAGTTGAAGAAACGTCTATTGATATTGGGGGAGGGTGGACCATTACTGGCACACCTTTGAGTTTACACGATCCTCGCCTTTTGGCTTTTGCAGAGACTGAGCGTAATTTATTGGAAGTCGAGTATGATGAATATGCTGCTTCTGATGCCGGTGGAGCAGCATTTTGTCGAGCAGCTGCTCTTATTCTCATGATCCTACTTTTCTTGCGCCATGCAATGGAAGTCTCCGATTCTGAAGACGATGATTACGTGTCTGCGTTCTTCTCTATTTTCTTGCTTCGAGCAGCTGGTTTTCTCTTGCCCTGCTACATTATGGCTTGTGCAATCAGCATCTTGCAACGTCGACAACGAAGACTGGTGGATATTACCTCCCACATTCGTTAA 1113 48.25 MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKVFDFWLRRMSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAASDAGGAAFCRAAALILMILLFLRHAMEVSDSEDDDYVSAFFSIFLLRAAGFLLPCYIMACAISILQRRQRRLVDITSHIR 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1039886 1045267 - Cp4.1LG09g01820.1 Cpe09g00179 474545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00179 370 SMART ringv_2 182 229 IPR011016 GO:0008270
Cpe09g00179 370 SMART ringv_2 75 111 IPR011016 GO:0008270
Cpe09g00179 370 Pfam RING-variant domain 76 100 IPR011016 GO:0008270
Cpe09g00179 370 Pfam RING-variant domain 183 228 IPR011016 GO:0008270
Cpe09g00179 370 ProSiteProfiles Zinc finger RING-CH-type profile. 175 235 IPR011016 GO:0008270
Cpe09g00179 370 CDD RING_CH-C4HC3_MARCH 183 229 - -
Cpe09g00179 370 MobiDBLite consensus disorder prediction 52 66 - -
Cpe09g00179 370 MobiDBLite consensus disorder prediction 159 173 - -
Cpe09g00179 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 239 IPR013083 -
Cpe09g00179 370 MobiDBLite consensus disorder prediction 41 67 - -
Cpe09g00179 370 MobiDBLite consensus disorder prediction 148 173 - -
Cpe09g00179 370 Pfam Protein of unknown function (DUF3675) 234 352 IPR022143 -
Cpe09g00179 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 99 - -
Cpe09g00179 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 108 363 - -
Cpe09g00179 370 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 99 IPR033275 -
Cpe09g00179 370 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 108 363 IPR033275 -
Cpe09g00179 370 SUPERFAMILY RING/U-box 180 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00179 - - - cmax:111467420 458.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01464 Cpe09g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01349 Cpe-Chr2:11925058 Cpe09g00179 Cpe-Chr9:1039886 1.42E-23 dispersed
Cpe03g00800 Cpe-Chr3:4991870 Cpe09g00179 Cpe-Chr9:1039886 2.31E-28 dispersed
Cpe09g00179 Cpe-Chr9:1039886 Cpe11g00706 Cpe-Chr11:5142548 3.91E-21 dispersed
Cpe13g00371 Cpe-Chr13:4006183 Cpe09g00179 Cpe-Chr9:1039886 4.28E-13 dispersed
Cpe01g01464 Cpe-Chr1:8766008 Cpe09g00179 Cpe-Chr9:1039886 9.56E-45 wgd
Cpe02g01060 Cpe-Chr2:9724559 Cpe09g00179 Cpe-Chr9:1039886 1.18E-48 wgd
Cpe20g00017 Cpe-Chr20:100348 Cpe09g00179 Cpe-Chr9:1039886 1.95E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00179 Cpe_Chr09 FPKM 4.563492 5.140995 8.582515 8.728585 28.156782 22.832951 25.301893 11.658093 10.912391 14.772992