Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00181 ATGAAAGTTTTTCTTAATGAAAGGTTTTCTCTATCCATTTCCGGAAAGTGGGCGCTTGCCGGCGTCACTTTCTTCTTGCAACAACAATCCTTTATGCATTTTCAAGAATTGAGTATTCAAATGGCAATCTCGTGTATTCCAACAAGCCAATTTGCTCTCTCAAAACCCAAGAATGAGTTCATAAATCAACCCCACCCACTTTCTCTTTTCTCCAAATGTTCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTAACCCCACCATTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTTGTATTCTCTCTTTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCTCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGACTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGA 852 41.43 MKVFLNERFSLSISGKWALAGVTFFLQQQSFMHFQELSIQMAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1049168 1050408 + Cp4.1LG09g01750.1 Cpe09g00181 474547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00181 284 PANTHER BNAA02G26650D PROTEIN 55 284 - -
Cpe09g00181 284 Pfam PPR repeat family 228 275 IPR002885 -
Cpe09g00181 284 Pfam PPR repeat family 127 175 IPR002885 -
Cpe09g00181 284 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Cpe09g00181 284 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Cpe09g00181 284 Pfam PPR repeat 204 227 IPR002885 -
Cpe09g00181 284 Gene3D Tetratricopeptide repeat domain 147 284 IPR011990 GO:0005515
Cpe09g00181 284 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cpe09g00181 284 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00181 - - - csv:116404120 427.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00181 Cpe-Chr9:1049168 Cpe04g00057 Cpe-Chr4:550468 1.16E-23 dispersed
Cpe20g00020 Cpe-Chr20:117207 Cpe09g00181 Cpe-Chr9:1049168 1.59E-08 wgd
Cpe20g00020 Cpe-Chr20:117207 Cpe09g00181 Cpe-Chr9:1049168 1.59E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00181 Cpe_Chr09 FPKM 12.799072 12.895467 8.340783 8.511653 14.078835 15.066435 14.950438 5.886731 6.427741 6.790474