Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00189 ATGTCCCTCAAAATTGCTATATATTGCCTTCAAAACTCTCCCATTTTGCTCACTCATCTGCCTTACATTATTTCTTCTGGAATGGGTTCTGTTCTTTTGTTTTTGGCAGGCTTCTATGCCATAGTTTCATCTGCTGATGCCTATGCAGGTGGAGGGTGGAGGGGCGCTCAAGCTACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGTCAAGGCTATGGAACAAATACTGCTGCTTTGAGTACGGCTCTGTTCAATAATGGGTTGAGCTGTGGTTCTTGCTATGAGATTAGGTGCACCAGTGGCCGTAAATGGTGCCTACCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAATAGTGCCCTCCCCAACAACGCTGGAGGGTGGTGCAATCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTACCAACACATTGCTCAGTACAAAGCAGGAATTGTGCAGGTTGCCTACAGAAGGTAA 528 48.3 MSLKIAIYCLQNSPILLTHLPYIISSGMGSVLLFLAGFYAIVSSADAYAGGGWRGAQATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCTSGRKWCLPGSIVVTATNFCPPNSALPNNAGGWCNPPLQHFDLSQPVYQHIAQYKAGIVQVAYRR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1092462 1093270 - Cp4.1LG09g02000.1 Cpe09g00189 474555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00189 175 PANTHER EXPANSIN-A15 33 175 IPR002963 GO:0009664
Cpe09g00189 175 PANTHER EXPANSIN 33 175 - -
Cpe09g00189 175 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Cpe09g00189 175 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Cpe09g00189 175 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cpe09g00189 175 PRINTS Expansin/Lol pI family signature 166 175 IPR007118 GO:0005576
Cpe09g00189 175 Gene3D - 39 175 IPR036908 -
Cpe09g00189 175 SMART dpbb_1 88 173 IPR007112 -
Cpe09g00189 175 Pfam Lytic transglycolase 88 173 IPR009009 -
Cpe09g00189 175 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Cpe09g00189 175 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Cpe09g00189 175 PRINTS Expansin signature 110 121 IPR002963 GO:0009664
Cpe09g00189 175 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Cpe09g00189 175 PRINTS Expansin signature 158 171 IPR002963 GO:0009664
Cpe09g00189 175 SUPERFAMILY Barwin-like endoglucanases 52 175 IPR036908 -
Cpe09g00189 175 Coils Coil 168 175 - -
Cpe09g00189 175 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 175 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00189 Cpe-Chr9:1092462 Cpe02g01346 Cpe-Chr2:11913145 5.37E-75 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe09g00189 Cpe-Chr9:1092462 1.07E-96 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe09g00189 Cpe-Chr9:1092462 5.63E-68 wgd
Cpe18g00787 Cpe-Chr18:7441911 Cpe09g00189 Cpe-Chr9:1092462 4.56E-75 wgd
Cpe04g01494 Cpe-Chr4:11841897 Cpe09g00189 Cpe-Chr9:1092462 8.93E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00189 - - cpep:111802732 370.163