Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00203 ATGGGTGACGATGAAGATAAGCTGCCACCGTCGTCGGTGCCGTCGCCGTTGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTAAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCAGGGCCCATGACCCTTGTCTCGAGCTTCTTCTCCGATTCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGCGCTATGACGTCGCCCGTGGCTGTTCCTCCGACGGCGTCCGAGCTTAAGGACTCTGCTGGTCTGCCCGATTCTCCGGGGCTTTTCTCGCCTGATCAGGGAACTTTTGGATTGACCCATCAGCAGGCTTTGGCTCAGGTTACCCTGCAGGCTGTAGAAGCCTATTCTCATAAGCAAATACAAGCACACTCAGTAGCAGGCTCTGCAGCCTCCTCAAAGCTTTTGACCGTATTTCCGAGCGAGAAGGCTAAAGATCAGCCAGTGCCACTTCAATTGCTGAACTCTGCAGTCGCGTCGAAGGAGTCGTCGGATATCTCTCAATCCGATCAGAGATCGGTATCTTCTTCGTGTAATGTCGATAGGCCTGCTGATGATGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGTACCCGAATTGTCCTGTCAAGAAAAAAGTCGAACGATCTCTGGAAGGCCACATTACTGAAATTATTTATAAGGGTGAACACAACCACGAACGACCTCAACCGAACAAGCGTGCAAAGGATGTCGGAAATTCTAATGGATGTTCAAGTGTTCATGGAAACACTGACCTATATTCTCAAGTAAAGAGTGGATATTTGAATAAGTTGAATGAGCAGTCAGCTGTGTCTTCCGTTGTGAAGAAGGATCGAGAATCGAACCTCGTTAAACATGGACAGTTGTTGGATGCTAGTGACAGTGAGGGAGCGGGTGAGATAGAGACTGGACCGAATAAGAACGATGAAGACGAACCGGATGCCAAGAGACGGAACACTGAGGCTCGGGTCGAGCCAGTGTCTTCTCATAGGACGCTCACGGAATCCCGAATCATTGTGCAGACTACAAGTGAAGTCGATTTGTTGGACGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGCAACCCTTACCCCAGAGCTTCAACAGACCAGAAAGCTGTGATAACGACGTATGAGGGCAAACACAATCACGACGTTCCAGCTGGTAAAATCAGCAGCCACGGCACAGCCAACAGTAACGTTCCTCGCCTAAAATCACAAAATATAGGTACTGAGAAAGACTTCTACCGT 1350 50.0 MGDDEDKLPPSSVPSPLKSKAFPLRPTINLPPRTSMESLLSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMTSPVAVPPTASELKDSAGLPDSPGLFSPDQGTFGLTHQQALAQVTLQAVEAYSHKQIQAHSVAGSAASSKLLTVFPSEKAKDQPVPLQLLNSAVASKESSDISQSDQRSVSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSLEGHITEIIYKGEHNHERPQPNKRAKDVGNSNGCSSVHGNTDLYSQVKSGYLNKLNEQSAVSSVVKKDRESNLVKHGQLLDASDSEGAGEIETGPNKNDEDEPDAKRRNTEARVEPVSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRASTDQKAVITTYEGKHNHDVPAGKISSHGTANSNVPRLKSQNIGTEKDFYR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1176967 1181374 - Cp4.1LG09g02180.1 Cpe09g00203 474569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00203 450 ProSiteProfiles WRKY domain profile. 373 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 84 110 - -
Cpe09g00203 450 SUPERFAMILY WRKY DNA-binding domain 370 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 302 358 - -
Cpe09g00203 450 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 445 IPR044810 GO:0003700
Cpe09g00203 450 MobiDBLite consensus disorder prediction 264 279 - -
Cpe09g00203 450 MobiDBLite consensus disorder prediction 176 195 - -
Cpe09g00203 450 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 Pfam WRKY DNA -binding domain 379 399 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 445 - -
Cpe09g00203 450 SUPERFAMILY WRKY DNA-binding domain 198 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 249 279 - -
Cpe09g00203 450 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 1 36 - -
Cpe09g00203 450 SMART WRKY_cls 378 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 Gene3D WRKY domain 183 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 415 450 - -
Cpe09g00203 450 Gene3D WRKY domain 365 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe09g00203 450 MobiDBLite consensus disorder prediction 425 440 - -
Cpe09g00203 450 MobiDBLite consensus disorder prediction 249 263 - -
Cpe09g00203 450 MobiDBLite consensus disorder prediction 332 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00203 Cpe-Chr9:1176967 Cpe14g00818 Cpe-Chr14:6556851 6.56E-68 dispersed
Cpe01g01491 Cpe-Chr1:8901402 Cpe09g00203 Cpe-Chr9:1176967 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49970 PF03106 WRKY 4.50E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00203 - - cmo:103489160 630.557