Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00209 ATGTTTCTCCAAATAAATCCCTATCCCACCCACCCTCCTCTACGCCATCATCACTGTGAGCTTTCAATATCCCCGCCGAGAAGAAACCTCATTACAGAGCTTTCTTTTCCAACCCCTATGGATCATTGGGTGACAACAGATGAGGACATTGACAGACAACAACGAGCCAGTAGAACACAAACATACTTGTTTCCCCTGAAATCCCAATCTTTCAGAGAGAAAACAACGGCGGGCTGGTTGGGAAGGCAATTTTTGCAGCAAATGAGTCGAGGGAATGAATTTTCCGACGACGAAATAGAGCGTGTAACCGCCGTAGCCGCCGCCGCCTACGCAATTCATTCCATTCAGAATTCAGAAATTGCGAGACGCAAAAAGAATGCCGATTATCCTGAAACGTCGTCGTTCCCAAAGTTTACACACCTCAAGGAAGACAATCGCCCCCCCACTCCTCGTCCGGCGCCGGAACCTGCTAAGCTTTCCCGGCGGTTAATAGATAAAGATCTTCTGAAAGATCCTGAAGAAAGCCCAGTAAGGAATGTGTCAGTGACCCACGAACAACCAAAACAGAAACCAACGGAAAAGACAACCGATCCCGGTAACCGTCCATACTTCAAAGAGACAGCTTTTTCCGGCAACAAACCAGACATCTCCGGCAGCCGAAGAACAGAACCAGAGAAACCATCAAACATCTCCGGCAGCCGAAGAACAGAACCAGAGAAACCAGCAGGCATCTCCGGCAGCCGAAGAACAGAACCAGAGAAATCAGCAGACATCTCCGGCCGGCGAAGAACAGAACCAGAGAAACCAGCGGTAGTCCCAAGACCTCCAACTCCAATTAATCGGCCGACCGACCCACAAAAACCACTCCCAACCCAAACCAGACCTTATGATTCAAGAGAAACAAAAGCAGATCAGTGGGAAAAGGCTGAGATGGCTAAAATCAACGAGAGATTCCATAAAGTGAACGAGACAGTATCTTACTGGGAAAGAAAGAAGAGGGACAAAGCCATGAGGAAATACGAAGAATCACAGGCTGCGGGCGTGAAGAGGTCGAAGAGGGAAAAAGGAAGAAAGAAATTCGAGGAAGACATGGATTTCATAAAGCAAATTGCAGAAGAAGCAAGAGCCAAAGCCGATCAAAAGCGAAGAAATGATATTCTTAAAGCTAATCAAAAAGCAGATATTATCAGACAAACAGGGGACCTCCCTGTTTCTTGTTCCTGCTGCTGA 1230 47.32 MFLQINPYPTHPPLRHHHCELSISPPRRNLITELSFPTPMDHWVTTDEDIDRQQRASRTQTYLFPLKSQSFREKTTAGWLGRQFLQQMSRGNEFSDDEIERVTAVAAAAYAIHSIQNSEIARRKKNADYPETSSFPKFTHLKEDNRPPTPRPAPEPAKLSRRLIDKDLLKDPEESPVRNVSVTHEQPKQKPTEKTTDPGNRPYFKETAFSGNKPDISGSRRTEPEKPSNISGSRRTEPEKPAGISGSRRTEPEKSADISGRRRTEPEKPAVVPRPPTPINRPTDPQKPLPTQTRPYDSRETKADQWEKAEMAKINERFHKVNETVSYWERKKRDKAMRKYEESQAAGVKRSKREKGRKKFEEDMDFIKQIAEEARAKADQKRRNDILKANQKADIIRQTGDLPVSCSCC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1215730 1219810 - Cp4.1LG09g02160.1 Cpe09g00209 474575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00209 409 PANTHER REMORIN FAMILY PROTEIN 51 409 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 241 269 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 121 305 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 270 289 - -
Cpe09g00209 409 Coils Coil 357 384 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 158 178 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 218 233 - -
Cpe09g00209 409 MobiDBLite consensus disorder prediction 338 360 - -
Cpe09g00209 409 Pfam Remorin, C-terminal region 298 404 IPR005516 -
Cpe09g00209 409 PANTHER OS02G0116800 PROTEIN 51 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00209 - - - cpep:111802427 823.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00209 Cpe-Chr9:1215730 Cpe01g01603 Cpe-Chr1:9786483 6.57E-09 dispersed
Cpe01g01495 Cpe-Chr1:8925633 Cpe09g00209 Cpe-Chr9:1215730 4.26E-38 wgd
Cpe02g01040 Cpe-Chr2:9608247 Cpe09g00209 Cpe-Chr9:1215730 8.69E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g71 . . Bda01g02133 . . . . . . . . . . Car18g01030 . Cpe09g00209 . . . . . . . . . . . . . . . . Cone19ag0916 . Cone9ag0555 . . . . . . . . . Bpe02g02322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009173 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00209 Cpe_Chr09 FPKM 0.991111 0.829854 0.0 0.506459 0.392344 0.0 0.258542 0.0 0.089654 0.188916