Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00220 ATGTATTTAGTGGAGAGTAAAGAAGGAGCAATAGCTTGTATGGTATTGTCCCTCTTTTTTCTGGGGACTTTCCCTGCACTTTTGACTCTTCAAGAACGGCGAGGGCGTCTCCCTCAGCATACTTTCCTTGATTACTCGATCACAAATTATTTAGCTGCTGTGATCTTTGCTTTGACACTTGGTCAGTTCGGAAACAGCTCACCGGATACTCCTAATTTCATCCAACAGCTTTCTCAGGTGCGAGATAATTGGCCTTCAGTCATGTTTGCGTTGGCCGGTGGTGTAGCGTTGAGTATCGGCAATCTTTCCTCTCAATATGCTTGGCCCTTTGTTGGTTTATCAGTTACAGAAGTGCTCGTTTGCAGCATAATAGTAGTTATAGGCTCAACCTTGAACTACTTTCTTGATGGCAAAATTAATAGAGCCGAGATTCTTTTCCCCGGTGTTGCGTGCTTTGTGATCGCTGTATTTCTTGGCTGTGCTGCTCACTTGTCCAACTCGGCCGATAACGAAGCAAAGCTGGAACACTTGTCTGCTGATTCAGAAAAAGAGGCAGTTGAAACCTCTCCTATTTTGAGCCATGTTGAATCAACAGATGTGGAGAGTGCCGATTGTTCGAGCCGAGGTGCAGAAGCTGGGACCGCAGACTTTCTTATTCAACTAGAAAGCAGAAGATCCATCAAGGTGTCTGGAAGAAGCACACTAATAGGACTGTTCATAACTTTCTTTGCTGGTGTTTCCCTTTCTCTCTTCTCACCTGCATTCAATTTGGCCACAAACGATCAATGGCACACTCTGAAGGATGGCATCCCACGCTTGTCGGTCTATACCTCATTTTTCTATTTCTCGACCTCTTTTTTCGTCTTAGCCTTCGTTCTTAACGTCGTTTTCCTTTACCGCCCTATGCTGAACTTACCCAAGACATCATTCAAGGCATATCTGAATGACTGGAATGGTAGGGGTTGGACCTTTTTGGCTGGTTTTTTGTGTGGATTTGGCAATGGTTTGCAGTTCATGAGCGGTCAAGCTGCTGGATATGCTGCAGCAGATTCTGTGGAGGCCTTTCCACTTATAAGCACGTTTTGGGGAATTGTTCTGTTCGGAGAATACTGTAGATCTTCAAGAAAAACATACGTTTTGCTTGTCGGCATGTTGTTTATGTTTACAGTGGCTGTTGTGGTTCTAATGGCTTCATCAGGGAATGGACATGAGAGAGGCAATTTCGTCATCATCGTTCATCACATCAGGGTGGATTTTTCGTATTCTTGGAGGTTGAAAATGTATATGGTGGAGAGCAAAGAAGGTGCTATAGCATGTATGCTGTTTGCGCTTTTCTTTTTGGGAACATGGCCAGCGATCTTGACTCTCCTGGAACGACGGGGGCGTCTTCCTCAACATACTTACCTCGATTACTCCATTACGAACTTTTTAGCTGCTTTGATCATTGCTTTAACTCTTGGGGAGATTGGAGAGAGCTCATATGATCATCCGAACTTTAGGCAACAACTTTATCAGGATAATTGGGCTTCTGTCATGTTTGCAATGGCGGGTGGTATAGTACTGAGTCTGGGGAATCTTTCTACTCAGTATGCTTTTGCTTTTGTTGGTTTATCAGTTACAGAAGTGATCACTGCAAGTATAACAGTTGTTATAGGTTCGACCGTGAACTACTTTCTTGATGACAAAATTAATAGAGCTGAGGTACTTTTCCCCGGTGTTGCTTGCTTTTTGATTGCGGTATGTCTTGGCTCTGCTGTTCACTCATCCAACGCAGCTGATAACAAAGCAAAACTGCAAAGTTTGCCAGCGGATGCAGTAAAAGGGTTGAAGACAACTGATGTCCCTTCATTTTCAGGCAAGGACTTGGAAAGTTCCGATTATCTTTCACAAAAGGCAAAAGCTGGGACTGCAAACTATTTGGTTGAACTTGAGAGTAGAAGATCCATTAAGGTGTTTGGGAAGAGCACATTGATTGGACTGTCCTTAACTTTCTTTGCTGGTGCTTGCTTTTCTCTCTTCTCACCGGCATTCAATTTGGCCACAAACGATCAATGGCACACTCTTAAGGAAGGCGTCCCCCACTTGGCTGTCTACACCGCATTTTTCTACTTCTCGGTCTCGTGTTTTGTGTTGGGTGTCACTCTTAACATTATCTTCCTTTACCAACCTATACTTAACTTACCCAAAACAACATTCAAGGCGTATCTGAATGACTGGAATGGTAGAGGATGGGCCTTGTTGGCTGGATTCTTGTGTGGGTTTGGCAATGGTCTGCAGTTCATGGGAGGTCAAGCTGCTGGTTATGCAGCAGCAGATGCTGTGCAGGCACTCCCACTCGTGAGCACGTTTTGGGCAATCCTTCTATTTGGAGAATATCGTAGATCATCGAAGAAAACATATTCTTTGCTCGTGAGCATGTTGGTTATGTTTGCAGTGGCTGTTGTGGTACTAATGGCTTCGGCGGGACATCGAAAGGAAAAAGTG 2484 44.24 MYLVESKEGAIACMVLSLFFLGTFPALLTLQERRGRLPQHTFLDYSITNYLAAVIFALTLGQFGNSSPDTPNFIQQLSQVRDNWPSVMFALAGGVALSIGNLSSQYAWPFVGLSVTEVLVCSIIVVIGSTLNYFLDGKINRAEILFPGVACFVIAVFLGCAAHLSNSADNEAKLEHLSADSEKEAVETSPILSHVESTDVESADCSSRGAEAGTADFLIQLESRRSIKVSGRSTLIGLFITFFAGVSLSLFSPAFNLATNDQWHTLKDGIPRLSVYTSFFYFSTSFFVLAFVLNVVFLYRPMLNLPKTSFKAYLNDWNGRGWTFLAGFLCGFGNGLQFMSGQAAGYAAADSVEAFPLISTFWGIVLFGEYCRSSRKTYVLLVGMLFMFTVAVVVLMASSGNGHERGNFVIIVHHIRVDFSYSWRLKMYMVESKEGAIACMLFALFFLGTWPAILTLLERRGRLPQHTYLDYSITNFLAALIIALTLGEIGESSYDHPNFRQQLYQDNWASVMFAMAGGIVLSLGNLSTQYAFAFVGLSVTEVITASITVVIGSTVNYFLDDKINRAEVLFPGVACFLIAVCLGSAVHSSNAADNKAKLQSLPADAVKGLKTTDVPSFSGKDLESSDYLSQKAKAGTANYLVELESRRSIKVFGKSTLIGLSLTFFAGACFSLFSPAFNLATNDQWHTLKEGVPHLAVYTAFFYFSVSCFVLGVTLNIIFLYQPILNLPKTTFKAYLNDWNGRGWALLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWAILLFGEYRRSSKKTYSLLVSMLVMFAVAVVVLMASAGHRKEKV 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1260406 1270441 + Cp4.1LG09g02110.1 Cpe09g00220 474586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00220 828 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 1 409 IPR030189 GO:0016021|GO:0022857|GO:0071705
Cpe09g00220 828 PANTHER BNAC09G21970D PROTEIN 1 409 - -
Cpe09g00220 828 Pfam Ureide permease 41 398 IPR009834 GO:0016021|GO:0071705
Cpe09g00220 828 Pfam Ureide permease 467 820 IPR009834 GO:0016021|GO:0071705
Cpe09g00220 828 PANTHER BNAC09G21970D PROTEIN 426 824 - -
Cpe09g00220 828 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 426 824 IPR030189 GO:0016021|GO:0022857|GO:0071705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00220 - - - soe:110791637 1018.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01505 Cpe09g00220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01091 Cpe-Chr12:9054703 Cpe09g00220 Cpe-Chr9:1260406 0 transposed
Cpe01g01505 Cpe-Chr1:8978301 Cpe09g00220 Cpe-Chr9:1260406 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g43 . . . . . Bpe10g00898 . Bma15g00133 Cmo04g01786 Cmo18g01129 . Cma18g01107 . Car18g01021 . Cpe09g00220 Cpe01g01505 Bhi07g01495 Tan04g1007 . Lac13g0373 Hepe10g1793 . . Cla05g02393 . . Cco05g2641 Clacu05g2568 Cmu05g2425 Cre05g2542 Cone13ag0908 . Cone6ag0529 . Lsi04g00364 Csa05g02510 Chy10g01057 Cme10g00358 . . . . . . . . . . . Cma04g01700 . Car04g01737 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000563 1 11 1 1 1 3 3 2 3 2 2 3 5 3 3 5 3 1 3 3 4 1 1 6 4 3 3 10 16 1 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00220 Cpe_Chr09 FPKM 0.607399 0.0 0.980673 0.692968 0.0 0.554725 0.880846 0.0 0.422641 0.766782